Actinidia eriantha (wild kiwifruit): 130767670
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Entry
130767670 CDS
T09464
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130767670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130767670
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130767670
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130767670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
130767670
NCBI-ProteinID:
XP_057480590
LinkDB
All DBs
Position
26:17301978..17313546
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AA seq
665 aa
AA seq
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MTLDIFAMSGLLNASLNESASNLLDSTGQSFASSFSAQPGAASPGFHHTGTIQGLHNFHG
NFNVPNMSGTLASRSSTMNNIPSNGVQQPTGSLSSGRFASNNLPVALSQISHGNSHGHSG
ITNRGGMNVIGSPGFSSSTNGVGGSIPGILPTSAVVGNRSGVPGLGVSPILGNTGPRITS
SIGNISVGNIGRSMSSGGGLSVPGLASRLNLTANSGSGNLSVQGPNRLSGMLQQVSPQMI
SMLGNSYPTAGAQLSQSHVQALNNLSAMGMLGDVNSKDGSPFDINDFPQLSGPPGSAGGL
QGQLGSFRKQGVGISPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNTVS
MMGRSAGFNLGGVYSAQLPQQQQQQQHAPSVSSSGISFSGVNQDLLHLHGSDMFQSSHSS
YHSQTGGPPGIGLRPLNSSNTVSDMGSYDQLIQQYQQHQNQNQNQFRLQQMSNQLYRDQG
VKTMHAAQVASDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKTFGSPW
SDEPAKGDPEFSLPQCYNAKQPPALTQSCFSKIPLDTVFYIFYSMPKDEAQLYAANELYN
RGWFYHRELRLWFIRVSNMEPLVKTNTYERGSYICFDPNTWETNRRENFVVYYEMLEKRP
ALPQH
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaccttggacatttttgcgatgtcagggttactaaatgcatctctgaacgaatcagct
tcaaatcttcttgacagtacagggcagtcttttgcttcatctttctcggctcaacctggt
gcagcctctcctggttttcatcacacaggaactattcaagggctgcataactttcatggg
aactttaatgtacccaacatgtctggcacacttgcatctagaagctctacgatgaataac
attccttccaatggggttcaacaacctactggaagcctttctagtggacgttttgcatca
aacaaccttcctgttgctctttctcagatatctcatggaaactctcatggtcattcaggg
ataacaaatagaggtgggatgaatgttattggaagccctggatttagtagtagcacaaat
ggcgttggtggttctattcctgggattttaccaacctctgcagtggttggtaaccggagt
ggtgttccaggactaggtgtatctccaattttgggaaatactggtcctcggattaccagc
tcaattggaaatattagtgtgggcaacattgggaggagcatgagctctggtggaggacta
tctgtgcctggtcttgcttctcgtttaaatctaactgccaatagtggttcaggaaattta
agcgtgcaaggtccaaatagacttagcggtatgcttcaacaagtttctccgcagatgatt
tctatgctaggaaattcctatccaactgctggtgcacaactatctcaaagccatgtccaa
gcattgaataatcttagtgctatgggaatgttgggtgatgtaaattccaaggatggttcc
ccctttgatataaatgatttccctcagctgagcggcccccccggttctgctggagggctg
caaggacaactgggttcatttcgtaaacaaggtgtgggtattagtcctattgttcaacaa
aaccaagagttcagtatccaaaatgaggattttccagctttaccaggatttaaaggtggt
aatgctgattatgctatggacatgcaccagaaagaacaacttcatgacaataccgtgtcc
atgatggggaggtctgctggattcaatttgggaggagtttattcagcacaacttccacaa
cagcaacagcaacagcaacatgctccatcagtcagtagcagtggcatctccttttcaggt
gtaaaccaggatcttctccatctacatggctcagatatgttccaatcttctcattcaagc
tatcactcacagaccggtggaccgcctggcataggtttaaggcctctgaactcttcaaat
acagtttctgatatggggtcatacgaccagcttatccagcagtatcaacagcatcaaaat
caaaatcaaaatcagttccgcctgcagcaaatgtctaatcagttgtatagagatcagggt
gttaaaacaatgcatgctgcacaagttgcttctgatccatttggtttgcttggtttgcta
agtgtaataaggatgagtgatcctgatctgacatcccttgcacttggaattgatctgaca
acgcttgggttgaacttgaactcagcagaaaatcttcacaagacatttgggtccccttgg
tccgacgagcctgcgaagggtgacccagagttcagtctgccacaatgttataacgctaaa
caaccgcctgctctaactcaatcttgtttttcgaagatcccattggacacagtgttttac
attttttacagcatgccaaaagatgaagcccagttatatgctgcgaatgaactgtataac
aggggttggttttatcacagagaacttcgactgtggtttataagggtttcgaacatggag
ccacttgttaagacgaatacatacgagagaggatcatacatctgtttcgatccgaacaca
tgggaaacaaatcgcagggagaattttgttgtctattacgagatgttggaaaaaagacca
gccttacctcaacattga
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