Actinidia eriantha (wild kiwifruit): 130767932
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Entry
130767932 CDS
T09464
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130767932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130767932
03012 Translation factors [BR:
aew03012
]
130767932
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130767932
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130767932
Translation factors [BR:
aew03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130767932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
NACHT
AAA_19
ATPase
nSTAND3
AAA_16
T2SSE
ABC_tran
AAA_30
Motif
Other DBs
NCBI-GeneID:
130767932
NCBI-ProteinID:
XP_057480990
LinkDB
All DBs
Position
26:2511437..2539520
Genome browser
AA seq
1206 aa
AA seq
DB search
MPYSAIFIPNYLTISLRQPKTTITAATTSLHLRHRLHFCPINPKRLLRPQPPSLPLVALK
LHRGLAYWRPAFAASCSAVSSSGLYPTLGFSASLPYFHYQDSPYGRLAYDEYASEVDSDR
EVESGQLGASSLDNIEEWKWKLTMLMRNKDEQEVVSRERKDRRDFDHLSILATRMGLYSR
QYTKVVVVSKVPLPNYRSDLDDKRPQREVVLPFGLQREVHAHLERYISRKSVNKEYFLDT
TLSRSSSFCSIDTGGGVHEQKETLIKRSIAAEKILRPKSLQLRNKQQDWQESPEGQKILE
FRRSLPAYKERDTLLHSISQNQVVVVSGETGCGKTTQLPQYILESEIEAAQGAVCSIVCT
QPRRISAMAVSERVAAERGENLGESVGYKIRLEGMKGKNTRLLFCTTGILLRRLLVDRSL
KGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFDGAPMIH
IPGFTYPVRSQYLENILEMTDYRLTPYNQVDNYGQEKMWKMQKQALRKRKSQIASAVEDA
IEAADFGEYSPRTRESLSCWNPDSIGFNLIEHVLCHIIRKERPGAVLVFMTGWDDINSLK
DQLQGHPLLGDPSRVLLLACHGSMASSEQRLIFDKPGDGVRKIVLATNMAETSITIDDVV
FVVDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFA
DYQLPELLRTPLQSLCLQIKSLKLGSISEFLSRALQPPEPLSVQNAIEYLKIIGALDENE
NLTVLGHNLSMLPVEPKLGKMLLLGSIFNCLDPIMTVVAGLSVRDPFLMPLDKKDLAESA
KTQFSARDYSDHLALVRAYEGWREAEGQKSGYEYCWRNFLSAQTLKAIDSLRKQFFYLLK
DTGLVDNNIETCNTWSHDGHLVRAIICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNS
VNAQELKIPHPWLVFNEKVKVNSVFLRDSTAVSDSVVLLFGGNISRGGLDGHLKMLGGYL
EFFMKPALADTYLRLKKELEELVQKKLLNPKLDIKNHEELLSSIRLLVSEDRCEGRFVFG
RQMPTSPKKATEGMLPGPPSKSSDGGGGDNSKNQLQTLLCRAGHGAPTYKTTQLKNKKFR
STVFFNGLDFVGQPAINKKLAEKDAAAQALQWLMGETQSSHKAVDHMSMLLQKSKKKHRV
QATKWR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcggcaatcttcattcccaactacctcaccatctctctccgacaacccaaa
accaccatcaccgccgcaacaacctctctacacctccgccaccgtctccatttctgccct
ataaaccctaaacgactcctccgcccccaaccgccgtctctgcctttggtggcccttaag
ctccaccgtggcctcgcttattggagaccggctttcgccgcatcttgctcggcggtgtct
tcgtctgggctttaccctactctgggctttagtgcttctttgccttattttcattatcag
gattcgccctatgggaggctggcctacgatgagtatgcttccgaggtcgattctgatagg
gaagtcgaatccgggcaattgggtgcttcttctcttgataacattgaagagtggaagtgg
aagttaaccatgcttatgcgcaacaaagatgaacaagaagtcgtgtcgagggagagaaaa
gatagacgtgattttgatcacctttcaatactggccaccagaatgggtttatatagccgc
cagtatacgaaggtagtagttgtcagtaaggtacctctgccgaattacagatctgatctg
gatgataaacgcccacagagggaggttgtcttacctttcggattacaaagagaagtacat
gcccatcttgaaagatacatttctaggaagtctgtgaataaggaatactttttagatact
accttgtccagatcaagcagtttctgcagcattgataccggtggaggagttcatgagcaa
aaggagaccttgataaaacgcagcattgcagcagagaaaatccttaggcccaaaagcttg
caactgcgcaataagcaacaagattggcaggaatctccagaaggccaaaagatactcgaa
tttcgcagaagtcttccagcatataaagagagagatacattattacactctatttcacaa
aatcaggtggtggttgtgtccggtgaaacagggtgtggtaagaccacacaacttcctcaa
tacatcttggagtctgaaattgaagccgctcagggagctgtatgtagtattgtttgtact
cagccgagacgaatatctgccatggcagtttctgaaagagttgccgctgaacgaggcgag
aatcttggagaatctgttggctacaaaattcggttggaaggaatgaaagggaagaatact
cgccttctgttttgcaccaccggcatcttgttgagaagattacttgttgacagaagcttg
aaaggggttactcatgttattgttgatgagattcatgaacgtgggatgaatgaagatttt
ctccttattgtcctaaaggatctccttcctcgtcgaccagaattgagattgattttgatg
agtgcaaccctcaatgctgagcttttctcttcttactttgatggtgctcctatgatccat
attcctggctttacatacccagttcgaagtcaatatctggagaacattttggaaatgact
gactataggttaactccatataaccaagttgataattatggtcaagaaaagatgtggaaa
atgcagaaacaagctctcagaaagaggaagagtcaaattgcttcagctgtagaggacgca
attgaagctgctgattttggggaatatagtccacgaactcgggagtctttatcctgttgg
aatcctgattcaattggctttaatctcattgagcatgtgctttgtcatattattagaaag
gaaaggcctggtgctgttttggtatttatgactggttgggatgacataaattctttaaaa
gatcagctccaaggtcatccactattgggagatccaagcagagttttgctgcttgcatgc
catggttccatggctagctcggagcagaggttaatatttgacaagcctggagatggagtt
aggaaaatagttctagccactaacatggctgagacaagcatcacgattgatgacgtagtg
tttgtggttgactgtggaaaggcaaaagagacatcatatgatgctctgaataacactccc
tgtttgcttccttcatggatctctaaggcttctgctcggcagcgaagaggtagagctggt
cgtgttcaaccaggcgagtgttaccatctctatcctcgatgtgtgtacgatgcttttgct
gattaccaactgcccgaacttttaaggacacctttgcagtctctgtgcttgcaaatcaaa
agcttaaaacttgggagtatctcagagttcctatcaagggccttgcagccacccgagcct
ttatctgttcaaaatgctattgaatatttgaagataattggggctttggacgaaaatgaa
aatctaacagtgctaggacacaacttgtcaatgcttccagttgagcctaaactggggaaa
atgctcttattaggatctattttcaactgcctagatccaataatgactgttgttgctggt
ctaagtgttagagatccattcctgatgccacttgacaagaaggatcttgcagagtctgca
aagacccaattctcagcccgtgattacagtgaccatcttgctcttgtccgtgcttacgag
ggttggagagaagctgaaggacagaaatctggttatgagtattgttggagaaatttcctt
tctgcacaaactctgaaagccattgactctctccggaagcaattcttttatttacttaaa
gacactggtctggttgataacaatatagaaacttgcaacacatggagccatgatgggcat
ctagtccgagccattatttgcgcgggtctgttccctggcatatgctctgtcgtgaacaaa
gagaagtctatatcattgaagaccatggaggatggtcaggtacttctgtactcgaattct
gtgaatgcccaggaactcaaaattccacacccgtggctggttttcaatgaaaaggttaaa
gtgaattcagtgtttcttcgggattcaactgctgtatctgattctgtggttctcttattt
ggagggaacatttctaggggaggcctggatggacacttgaaaatgttgggaggatacttg
gagtttttcatgaaacctgccttggcagatacatatctaagattgaagaaagagcttgaa
gaacttgtacaaaagaaacttttgaatcccaagttggacataaaaaaccacgaggagctc
ctgtcgtccataagactgctggtatcagaggaccgttgtgagggtagatttgttttcggt
cgtcaaatgccaacatccccaaaaaaggcaaccgaagggatgctgccaggcccaccctcg
aaaagtagtgatggtggaggaggtgataattcaaagaatcagctgcaaacattgctttgc
agggctggacatggagcacccacctacaagacaacacaactcaagaacaagaagttccgt
tccactgtgttttttaatgggttggactttgtcggccagcctgccatcaataagaaactt
gctgaaaaggatgctgctgcccaggctttacagtggttgatgggtgaaactcaatcatct
cataaagctgttgaccacatgtcaatgcttttacaaaagagcaagaagaaacatagagtt
caagctactaagtggaggtag
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