Actinidia eriantha (wild kiwifruit): 130769324
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Entry
130769324 CDS
T09464
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130769324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130769324
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130769324
Spliceosome [BR:
aew03041
]
Complex C
Other components
Step II factors
130769324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ABC_tran
PhoH
AAA_30
DUF6259
TsaE
NB-ARC
Motif
Other DBs
NCBI-GeneID:
130769324
NCBI-ProteinID:
XP_057482600
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All DBs
Position
27:complement(15996796..16008721)
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AA seq
719 aa
AA seq
DB search
MPSVASGGVKDSTQSNNQSSGTPSKADFFTRKQRIAQQRKSLPIASVEKRLVEEVRSNDI
LIIVGETGSGKTTQIPQFLFNAGFCHDGKIIGITQPRRVAAVSVARRVAEECGVELGQRV
GYSVRFDDMTSCSTRIKYMTDGLLLREALLDQYLSRYSVIIVDEAHERTVPTDVLLGLLK
SVQKLRSGPINQLPNIEHMKADNGALMDKKNDAQRASILKQCRGGIKLSPLKLIIMSASL
DARAFSEYFGGAKAVHVQGRQFSVDILYTRHPETDYVDAALITIFQIHLEEGPGDILIFL
TGQEEIESSERLVKERLRQLPEDKQMLKVLSIFSSLPSEKQMQVFMPAPTGFRKVILATN
IAETSVTIPGIKYVIDPGLVKARQYSANTGMESLIIVPTSKAQALQRSGRAGREGPGKCF
RLYPEREFEKLKDSTLPDILRTDLSNAILQLKALDVDNILGFDFMEKPKSEAVVKSLELL
ALLGALTDEYKLSDPVGHQMARLPLDPTHSKALILASQFNCLEEMLIAVAMLSVESIFYA
PREKLEEARTATKCFSSLEGDHQTLVNAYRASDEFFEKTKMGNSREKAEKNLRKWCKENF
INSRSLRHARDIHRQIRENVEHMGLRVASCGDETIQFRRCLAATFFLNAALKQPDGTYKV
LSSGQTVQIHPSSMLFRKKAECIIFDDLIRTNNNYMRNVTRIDYLWLPELAPQYYALKG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggtggcttctggcggagtcaaagactccacgcagagcaataatcaatcctcc
ggcacgccatccaaagccgacttcttcactaggaagcaaaggattgcgcagcagagaaaa
tccctaccgatcgcttcagttgagaaacgactggtggaagaggtcaggagtaacgacata
ctgataattgttggggaaactggaagtggaaaaacaacacagataccacagttcttattt
aatgcgggattctgccatgatgggaaaatcattgggatcactcaacctagacgtgttgca
gctgttagtgttgcaagaagggtagctgaggaatgtggtgttgagttgggccaaagagtt
gggtactccgttcgatttgatgatatgacgtcctgttcaactaggatcaaatacatgaca
gatggattgctattgagggaagcattattggaccaatatctctctaggtactcagttatt
attgttgacgaggctcatgagagaactgtacccactgatgtcttgctgggattactgaaa
agtgttcagaaactgaggtcgggacccatcaatcaactccctaatattgaacatatgaag
gcagacaatggtgcgctgatggataaaaaaaatgatgctcagcgtgctagtattctcaag
caatgtcggggtggtataaagctcagtccattgaagttaatcatcatgtctgccagtctg
gatgcacgtgctttttctgagtactttggtggtgcaaaagctgttcatgttcaaggccga
cagttttccgtcgatatactgtacactcgtcatcctgagacagattacgttgatgccgcc
ttaataactatatttcagatacatttggaagagggtccaggtgacatactcatattcctg
actggacaagaagagattgaatcatctgagaggcttgtcaaagaaagactccgacagtta
ccggaagacaaacaaatgctaaaagttttgtcgatattctcatctcttccctcagaaaag
cagatgcaggtcttcatgcctgctccaactggctttcgcaaggtaatactggcaactaat
attgctgaaacatctgtaacaattcctggaattaagtatgtaatagatcctggattggtg
aaagctcgccagtactccgctaatacaggaatggaatcattgattattgttccaacctca
aaagcacaggctctccaaaggagtggacgtgctggccgtgaaggacctggcaagtgcttt
cgactctatcctgagagagaatttgaaaaactcaaggattccacacttccagatattttg
cgcacagacctttcaaatgccattttgcaactcaaggctcttgatgttgataatattctt
gggtttgacttcatggaaaaaccgaaaagcgaagctgttgtcaaatcattggagttactg
gccttgctaggtgctttaacagatgaatataaattgtcagatccagttgggcatcaaatg
gctcggttgcccttggatcctactcattccaaggcactcatcctggctagtcagttcaat
tgcttggaagaaatgttaatagctgttgcaatgctttcagtggaatctattttctatgca
cctcgtgagaagttagaggaggcacgaactgcaacaaaatgcttctctagtctagaggga
gaccaccagactttggttaatgcataccgggcgtctgatgagttctttgagaagaccaag
atggggaacagtagagaaaaggctgaaaaaaatctgaggaaatggtgcaaggaaaatttc
atcaatagccgctccctaaggcatgctcgtgatatacacaggcaaattcgggaaaatgtt
gaacacatgggtctacgtgttgcttcatgtggagatgagacgattcaatttcgccgttgc
cttgctgctacttttttcctcaatgcagctttgaagcagcctgatggtacatacaaggtt
ttgtcaagcggtcaaacggtgcagatccacccttcgtctatgttatttcggaaaaaggca
gagtgcataatctttgatgacttaatccggactaataataattacatgcgcaatgttact
agaattgattacttgtggttgcctgagctggctcctcaatactatgccttgaaggggtag
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