Actinidia eriantha (wild kiwifruit): 130770152
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Entry
130770152 CDS
T09464
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130770152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130770152
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130770152
mRNA cycle factors
Common to processing body (P body) and stress granule
130770152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
130770152
NCBI-ProteinID:
XP_057483476
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All DBs
Position
28:16809171..16822995
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AA seq
961 aa
AA seq
DB search
MMIVDMDKIAAPSSWELAQRLYDKNIELEKRRRRSAQARVPSDPNAWQQMRENYEAIILE
DHAFSEQHNIEYALWQLHYRRIEEFRAHFSAALVSTSTSQGVKVPPRPDRINKIRLQFKT
FLSEATGFYHDLILKIRAKYGLPLDYLSEDLENRIVMEKDGKRSVEMKKGLISCHRCLVY
LGDLARYKGLYGEGDSKSRDYAAASSYYLQAVSIWPSSGNPHHQLAILATYSGDELVAVY
RYFRSLAVDSPFSTARDNLIVAFEKNRQSYSLLHGDTKASAISESPSQVTAKGRGRGKAE
VKLQAKDANVGARLVVEKTTGVHDTYKAFCICFVRLTGILFTHTSLETFAEVLSLVSSTF
NELLSLGPEDELNFGTDAVENGLFIVRLISVILFTVHNVNKDGEGQTYADIVQHTVLLEN
ALTSAFELVGHMVKRCVQLHDPCSSYLFPGILVFIEWLACSPDVAAGSGIDNKQATARSV
FWNHCISFLNKLLSGSMVKDDEDKTCLFNTGRYEEGEAENRFALWEDFELRGFLPLQHVQ
TILDFSRKHSVRGDSKKEKIARVQRILAAGKALANVVKVDQRTITFDSKMKKFIVGVKPQ
ISDDYTPAPALGSPKVDGMNQPLPTETMNNSNFEQPKAQLCVEGEEEDEVIVFKPTVMER
QIDSSVSNWMPCEGLEPRKYAFAANSQFHGNSVSAHHSDVPQQTNFNTSAKPPVSIAQNF
LQHLQPIQSHSSTWLDPQASLANGMEGLNILENGHASLSLPIQQSVNVNASGISYSQAKA
SEMVMQSKIDCVASSGVTSGTIAVNTSSAITASSRKSPVNRPVRHLGPPPGFTSVPPKLV
NEPMQGSDLMADNLLTDDYRWLDGYKKSLPMQGSDLNQSINHPSQSSLHYVGNNNGSGGT
NNFPFPGKQVPPKQFSMEKQNGWENNHALEHQNLSYEQLQPFIALSEQHQGKSMWGGPSR
V
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtagacatggataaaattgctgctccttcatcatgggagcttgctcaacga
ctttatgacaagaatatagagttggaaaaaaggcgtcgtagatcggcccaggccagagtc
ccttcagatccaaatgcctggcaacagatgcgtgagaactatgaagcaataatacttgag
gaccatgcgttttctgagcagcacaatattgaatatgctctgtggcagctacattacagg
cgaattgaggagttcagagcacacttcagtgctgctttggtctctacaagtacatctcag
ggtgtaaaggttcctcctcgacctgatcgaattaataaaatacgtttgcagttcaaaact
ttcctttctgaagctactggattttaccatgatctgattttgaaaataagagcaaagtat
gggcttcctctcgattatctctctgaggacttggaaaatcgaattgtcatggagaaagat
ggaaagagatctgttgagatgaagaaaggtctgatatcttgtcatcgttgtttggtgtac
ctgggtgatcttgctcgttacaaaggattgtatggggagggcgattccaaaagtcgtgat
tatgcagcagcttcaagttattacctgcaagctgtatctatttggccatccagtgggaat
ccccatcatcagcttgccatattggctacctattctggggatgagttagtggctgtttac
cgttattttcggagtctggcagtggatagtcccttttcaactgctagggataacttgatt
gttgcatttgaaaagaatcgtcagagttactctctgctgcatggggatacaaaagcttct
gctatcagtgaatcaccgtcgcaggtgactgccaaaggaagaggaagaggaaaagcagag
gtaaaactccaagctaaggatgccaatgttggtgccaggcttgtagttgaaaagaccacc
ggtgtccatgacacatataaagcgttttgtatatgctttgtccgtctaacgggcattctt
ttcacccacacgagcttggaaacatttgcagaagttctatcactggttagcagtactttc
aatgagcttctttctttggggccagaagacgagttgaattttggcacagatgccgttgag
aatggacttttcattgttcgtcttatctccgttatattatttacggttcacaatgtgaat
aaggatggtgaaggtcagacttatgcggacattgttcaacatacagttcttcttgagaat
gcacttacttcagctttcgaattagtggggcacatggtgaagagatgtgtgcagttgcat
gatccttgttcaagttacttgtttcccggaattctagttttcatagaatggttggcttgt
tctcctgatgttgcagcaggcagtggaatagacaataaacaagcaactgctagatcagtt
ttttggaaccattgcatatctttcctaaataagcttttgagtgggtctatggtcaaagat
gatgaagataagacctgccttttcaatacgggaaggtatgaggaaggagaagctgaaaac
cggtttgctttgtgggaggattttgaattgagagggttcttgcctcttcaacatgtgcaa
acaattttagatttttcaaggaaacattctgttagaggtgatagcaagaaagagaaaatt
gctcgtgttcaaaggattcttgcagcaggaaaggccctagcaaatgtagttaaggttgac
cagagaacaataacttttgattcgaagatgaagaaatttattgttggtgttaagcctcaa
atatcagatgattatacacctgcacccgctttaggcagtcctaaagtagatggcatgaat
caaccacttccaacggagactatgaataattcaaattttgagcagccaaaggcacaacta
tgtgtggaaggggaagaggaggatgaagtgattgttttcaagccaacagtgatggaaagg
caaattgattcgtctgtttcgaattggatgccttgtgaaggcctggagcctcgcaaatat
gcttttgctgctaattctcagtttcatggtaactctgtttcagctcatcacagtgatgtt
ccccagcagactaattttaatacaagtgcaaaaccacctgtttccattgcccaaaacttc
ctgcagcatctgcaaccaattcaatcacactcttcaacatggttggacccacaagcttct
cttgctaatggcatggaaggtttgaacattttggagaatgggcatgcttcactttcacta
cccattcaacaatccgtcaacgtcaatgcaagtggtatatcatatagccaggcaaaggct
tcagaaatggtgatgcaatccaaaattgattgtgttgcatcttctggagttacttctggc
actattgctgtaaatacatcctcagcaatcacagcaagttcaagaaaaagtccagttaac
cgacctgtaaggcatcttggccctccacctggttttacctctgtccctcctaaactagta
aatgagcccatgcaggggtccgatttgatggccgataatctgctcactgacgactatagg
tggttggatggatacaagaagtcattgccaatgcaagggtcagacctcaatcaatctatc
aaccatccgtcccagtctagccttcattatgttggtaataacaatggttctgggggaaca
aataactttccctttcctggaaaacaagttccaccaaagcagttttctatggaaaagcag
aatggttgggagaataaccatgctttagagcatcagaatttgtcctatgagcagctgcag
ccgtttatcgcactatcagagcaacaccagggaaagtctatgtggggaggcccttcccgt
gtgtga
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