Actinidia eriantha (wild kiwifruit): 130770839
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Entry
130770839 CDS
T09464
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130770839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130770839
03009 Ribosome biogenesis [BR:
aew03009
]
130770839
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130770839
Spliceosome [BR:
aew03041
]
Complex A
U2 snRNP components
U2 related factors
130770839
Complex B
130770839
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130770839
Ribosome biogenesis [BR:
aew03009
]
Eukaryotic type
90S particles
Helicases
130770839
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
FtsK_SpoIIIE
SRP54
Cas3-like_C_2
T2SSE
AAA_30
AAA_7
NACHT
AAA_29
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
130770839
NCBI-ProteinID:
XP_057484427
LinkDB
All DBs
Position
28
Genome browser
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDDTSVAAKVAKSNGVGAVLGNSNSAATLVNRWNGRPYSQRYYEIL
EKRKTLPVWHQKDEFFQVLKSNQTLILVGETGSGKTTQIPQFVLEAVELETPDKRKKFMI
GCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSGARTVLKYLTDGMLLREAMTD
PLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP
LMKVPGRLHPVEILYTQDPERDYLEAALRTVGQIHMYEPPGDILVFLTGEEEIEEACRKI
SKEVANMGDNVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGPPGRKVVVSTNIAETSL
TIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCYRLYTEK
SFNNDLQSQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGA
LDDEGNLTKLGEIMSEFPLDPQMAKMLVVSPKFNCSNEILSISAMLSVPNCFVRPREAQK
AADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRIM
VRYNLKLCSTEFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLD
HKPEWVIYNEFVLTSRNFIRTVTDVRGEWLVDIAPHYFDLANFPPCEAKRALERLYKKRE
KEREEPKNNK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagaggaagaggaaggtgagcttgttcgatgtggtggacgacacctcggtg
gcggccaaagtggcgaaatccaacggcgtcggcgcagttctcgggaacagcaactcggcg
gcgacactggtcaaccgttggaatgggaggccgtactcgcagaggtattacgagatattg
gagaagaggaagacgcttcccgtttggcaccagaaagatgagttcttccaagtcttgaaa
tccaaccagaccttaatattggttggtgaaactggtagcggtaaaacaactcagattccc
cagtttgtcctggaagctgttgaattagagaccccagataagcgcaagaaatttatgatt
ggatgcacgcagcctcgcagggtggctgctatgtctgtttctcgtcgggttgctgaagag
atggatgttactattggagaagaagttggatatagcattcgttttgaagactgcagtggt
gcaagaacagttttgaagtatttaacagatggtatgctattaagagaagctatgacagac
ccgcttttagaaaggtacaaagtgataattcttgatgaggcacatgaaagaactttggca
acagatgttttatttgggcttctgaaagaagtactgaaaaatagacccgatctcaagtta
gttgtgatgagtgctactcttgaggctgaaaagtttcagggttatttctatggtgcacct
cttatgaaagttccaggaaggcttcatccggtggagattttatacacccaggatcctgag
agggactaccttgaagcagcacttcgtacagttggtcagatacacatgtacgaaccgcct
ggtgacatacttgtttttcttactggagaagaggagatagaagaagcatgccggaaaata
tcaaaagaagtagcaaatatgggagataacgtggggcctgtgaaagctgtgcccctgtat
tctacacttcctccggctatgcagcagaagatatttgaacctgctcctcctccgctgaca
gaaggcggtcctcctgggaggaaggttgtagtgtctacaaacattgcggaaacttctttg
accatagatggtatagtttacgtgatagaccccgggtttgccaaacaaaaagtctataac
cctcgaatacgtgttgaatctttattagtctctcctatatcaaaggctagtgctcaccaa
agagcagggcgtgctggaagaacacaaccaggaaaatgttatagactctatactgagaaa
agtttcaataatgatcttcagtcacagacctacccagaaatattgcgatcaaaccttgct
aatacggttcttaccttgaagaagctagggatagatgatctggtccattttgattttatg
gacccccctgcacccgagacactgatgcgcgcgttagaggtcttgaattatttgggagca
ttggacgatgaaggaaacttgaccaagctgggtgagatcatgagtgaattccccttggat
ccacagatggcaaagatgcttgttgtcagccccaaatttaactgttcaaatgagattctg
tccatatcagctatgctttcagtacccaattgctttgtccggcctagggaagctcaaaaa
gctgcagatgaagcaaaagctcggtttggacacattgatggggaccacctcacgctcttg
aatgtataccatgcctacaagcaaaacaacgaggatccatcttggtgttacgaaaacttt
gttaatcaacgggcgttaaaatctgccgataatgtcagacaacagctggttcggattatg
gttaggtacaacctgaagctatgcagcacagagtttaacagccgggactattacatcaac
atcagaaaggctatgctggctggatatttcatgcaagtggctcatctggagcgcactgga
cattatttgactgtgaaggacaaccaagtggttcacttgcacccttcaaattgcctggat
cataaaccagagtgggtcatctataatgagtttgttttaacaagcagaaacttcatccgt
acagtaacagatgttcgtggcgaatggttggttgatatagcaccccactactttgacctt
gcgaactttccgccgtgtgaagcaaagcgtgctcttgaaaggctttacaagaaacgggaa
aaggagagggaagagcccaagaacaataagtag
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