KEGG   Actinidia eriantha (wild kiwifruit): 130771671
Entry
130771671         CDS       T09464                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
aew  Actinidia eriantha (wild kiwifruit)
Pathway
aew03013  Nucleocytoplasmic transport
aew03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aew00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130771671
  09122 Translation
   03013 Nucleocytoplasmic transport
    130771671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aew03019]
    130771671
   03041 Spliceosome [BR:aew03041]
    130771671
Messenger RNA biogenesis [BR:aew03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130771671
Spliceosome [BR:aew03041]
 Complex C
  Other components
   EJC/TREX
    130771671
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130771671
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C eIF2A Beta-prop_WDR35_TULP_N Beta-prop_EML Beta-prop_EIPR1 Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 Beta-prop_IFT80_2nd WDR90_beta-prop_4th Beta-prop_WDR11_1st WD_LRWD1 CNH Beta-prop_SCAP DUF7099 PSI
Other DBs
NCBI-GeneID: 130771671
NCBI-ProteinID: XP_057485310
LinkDB
Position
29:complement(18842784..18848063)
AA seq 313 aa
MEATIPLKNLHSREYQGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVCLWDARSGKCSQQAELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKAIHKRKFNYEVNEIAWNMRGDMFFLTTGNGTVEVLAYPSL
QAVSTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF
NYTGEYIASASEDLFIDISNMQTGRSVHQIPVRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIYGFETA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaggcaacaatacctttgaagaacctccacagcagagaatatcaaggccacaagaag
aaggtgcattcggtggcttggaattgcattggtacgaagctcgcgtctggttccgtcgat
caaacggctcggatttggcacatcgagcctcatggacatggtaaggttaaagatattgaa
ctgaaggggcacacagacagtgtggatcagttgtgctgggaccccaaacatgctgactta
atagcaactgcatcgggtgacaagacagtttgtctgtgggatgctcgaagtggaaaatgc
tcacagcaagcggaacttagtggcgagaatattaatatcacctacaagcctgatggtaca
cacattgctgttgggaacagggatgatgaactaacaatattggacgtacggaaatttaag
gccatccacaagcgcaaattcaattatgaggtaaatgagattgcatggaatatgagagga
gatatgttctttttgacaactgggaatggtactgttgaagtactagcatatccatctctt
caagcagtttccacccttatggctcatacagctggttgctattgcattgcgattgaccca
ttaggacgatattttgctgttggaagtgctgattccttagtcagcctttgggatatttca
gagatgctttgcgtgcgaacattcacaaaactcgagtggccagtgaggacgataagcttc
aattatacgggagaatatattgcttctgccagtgaagacttgttcatcgatatatccaac
atgcaaaccggacgatcagtccaccaaattcccgttcgggctgccatgaacagtgtggaa
tggaatcctaaatacaatttgcttgcatatgctggagatgataaaaacaaatatcaggct
gatgaaggtgttttccgaatatatggcttcgagactgcatag

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