Actinidia eriantha (wild kiwifruit): 130771967
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Entry
130771967 CDS
T09464
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130771967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130771967
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130771967
mRNA degradation factors
5'-3' decay
Decapping complex
130771967
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
130771967
NCBI-ProteinID:
XP_057485668
LinkDB
All DBs
Position
29
Genome browser
AA seq
814 aa
AA seq
DB search
MDMDGFGSGGSIQQTPNPQDLHQFAANSTGDAVFDAAQYSFFGNDSVEEVELGGLEDEED
EFPPVGFVDEQNQLEREEGEVLGSFSEIDDLAGTFSKLNTVVSGSRSAGVIGDWGSRESS
SAADWVQGTDFPSWFDQQILDADGTEEGKRWSSQPHSSAIGIPESTHLHRTSSYPEQQHQ
HQQFSSEPILLPKSSFTSYPPPGGGSQQALPNYHANHSNIPYHPGGHQMPLSSSNLSPFS
NPRHQLSALPHGPQFGGNLTQYKSPSLSGNGQPQNQWVSQTSAFPSDRATLLNNVLQQQL
PHQNGLMPPQLMPHHHSHQHRLPHPFQPSYSQLQSQLFNPHLSSSPPMMNKLEAMLGLAD
LRDQIPRLPRGRQTSHYSQQGFDTFSQKRDSGWPQFRSKYMAPDEIENILRMQLAATHSN
DPYVDDYYHQACLAKKSAGAKLRHHFCPTLLRDLPPGARTTTESHAYLQVDALGRVAFPS
IRRPRPLLEVDPPNSSGAGSTEQNTPERPLEQEPMLAVRVTIEDGLCLLLDIDDIDRFLQ
FNQLQDGGAQLKRRRQALLEGLAASLQLVDPLGENGQTVDLGSXDDFVFLRLVSLPKGRK
LLSKYLQLLFPSGELMRVVCMAIFRHLRFLFGGLPTDPGVAEATFDLANTISSCVRVMEL
KALAACLASVVCSPEHPPLRPIGSSAGDGASIVLKSVLETATELLTGPQGAGNCSIPNRA
FWQASFDSFFGLLTKYSFNKYDTIMQSFLMQASPDMDVIGADAAKAISKEMPVELIRASL
PHTDEQQRKLLLDFVRRSVPVLGFNGHAGGSGGT
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggatatggatggatttggaagtgggggtagtattcaacagactccaaatcctcaggat
cttcatcaattcgccgccaattcaacaggagatgcagtatttgatgcagcacaatattct
ttcttcggaaatgattctgttgaagaagttgagttggggggactggaagacgaggaagat
gagtttcctccagttgggtttgttgatgaacagaaccagttggaacgggaagagggtgaa
gttttaggatctttttctgaaattgatgatcttgccggcacgttttcaaagctaaacacg
gttgttagtggatcaagaagtgcaggggttattggtgactggggctccagagaaagttcc
tctgctgctgactgggtacaagggacagatttccccagctggtttgatcagcaaatactt
gatgcagatggcactgaggaaggtaaaagatggtcatcacaaccgcattcttccgctatt
ggtattccggaatcaacacatttgcatagaacatcttcgtacccggagcagcaacaccaa
caccaacaattttccagtgaaccaattcttttacccaaatcttcatttacttcatatcct
cctcctggtggcgggtctcagcaagctttaccaaactaccatgcaaaccattctaatata
ccatatcatcccggtgggcaccagatgccattgtcttcatccaatctctctcccttctct
aaccctcggcatcagttgagtgccttaccccatgggccacaatttggtggaaatttgaca
cagtataaatctccaagtctctctggtaatggccaaccacagaaccaatgggtcagtcag
actagtgcatttcccagtgatcgtgcgaccctcttaaataatgtgttgcagcagcagtta
cctcatcaaaatggtttaatgcccccacagttaatgccacatcatcactcacatcaacat
agactgcctcatccatttcagccatcatatagtcaattgcagtcgcaactatttaatccc
catctttcttcatccccgccaatgatgaacaagcttgaagcaatgcttgggttggctgat
ttgagagaccaaatacctagattgccgagaggtagacagacctctcattactctcaacag
ggctttgataccttttcccagaagcgtgatagcgggtggccacagttcagatccaagtat
atggcacctgatgaaattgagaatattcttagaatgcagcttgcagcaacacatagtaat
gatccatatgtagatgattattaccaccaggcttgtcttgcaaaaaagtctgccggtgca
aagttgagacaccatttctgcccaacactcctgagggatctccctcccggagctcgtact
actactgagtcacatgcttatctccaggttgatgctcttgggagagttgcctttccttct
attcggaggccaagaccacttcttgaggttgaccctccaaattcatctggtgctggcagc
accgaacaaaatacacctgaaagacccttggaacaggagcctatgcttgctgttagagta
actattgaggatggcctctgtctgctccttgatatcgatgatattgacagattcctacaa
ttcaatcagctccaagatggtggggctcagctgaaaaggaggcgacaggccctgcttgaa
gggctggcagcatcgcttcaactggttgatccacttggcgaaaatggccaaactgttgat
ctaggctcctaagatgacttcgtattcttacgattggtctctcttcccaaaggccggaag
ctgctctcaaaatacctgcagcttctctttcctagtggtgagctaatgcgagtagtctgc
atggccattttccgtcatttgaggttcttgtttggtggcctcccaactgatccgggagta
gctgaagcaacctttgacctggcaaatactatctcatcttgtgttcgtgttatggagctg
aaagcactagctgcttgtcttgcctctgtggtttgttccccagagcatcctccactgcgt
cccattggaagctctgctggagacggggcttctattgtcctgaaatctgttcttgagacg
gcaacagagctcctaactggtcctcaaggggctggcaactgtagcatacctaatcgggcc
ttttggcaggcctcttttgattcattctttggccttttgaccaagtatagttttaataag
tatgacactattatgcagtcatttctcatgcaggcctcgcctgacatggatgttattggg
gcagatgcagcaaaggctatcagtaaggagatgccggttgagctcatacgtgcaagtctt
cctcatactgatgaacaacagaggaagctccttttggattttgtacggcgctccgtgcct
gtgttaggattcaatggtcatgctggagggagtggtggcacatga
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