Actinidia eriantha (wild kiwifruit): 130773072
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Entry
130773072 CDS
T09464
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130773072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130773072
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130773072
Spliceosome [BR:
aew03041
]
Complex C
Other components
Step II factors
130773072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
DEAD
HA2_C
AAA_19
ABC_tran
AAA_30
nSTAND3
ATPase_2
SLFN-g3_helicase
NPHP3_N
AAA_16
Helicase_RecD
NACHT
AAA_29
AAA_14
FtsK_SpoIIIE
AAA_23
AAA_24
Flavi_DEAD
ResIII
NB-ARC
DAP3
SRP54
AAA_33
Sigma54_activat
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
130773072
NCBI-ProteinID:
XP_057486988
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MANLPILQFEEKILETIERNPVVVIIGETGSGKSTQLSQMMHKRGYTKSGAIAVTQPRRV
AAVSVSRRVAQELGVRLGEEVGYAIRFEDRTSEKTCIKYLTDGVLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLMRRLIKKRSSNLKVLITSATLDGEKVSRFFGNCPILNVPGK
LFPVEIFYSAERPKSYLESSFKTAIDIHVKEPEGDILIFMTGQDDIDKLVKKLEERVQSL
EEGSCMDAIILPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDIVQISRVQADQRAGRAGRTRPGKCYRLYPSTVYHEELLDATVPE
IQRSSLGGSVLYLKSLDLPDMNILKFGFLDPPSSESLEDALKQLFLIDAIDENGSITSIG
RTMAELPLEPSLSRTLMEANEYGCLSQALTVAAMLSAETTLLAGRSKSMEKKRKHDPPSD
LPDGSGWGDHIQLLQIYEVWDQTNYDMEWCKDNNLQVRGMKFVRDVRKQLSQIMQKIAKG
SLDVQTKERWKESREDYRKLRKALSVGYASQLAERMIRHNGYRTLGFKPQLVQVHPSCVL
RIDDEGMLPNYVVYHELISTSRPFMRNVCAVEMPWVLPILKKLENLNINRLSGGMVQSEE
QTEGEKTTLLKKDVDAARPPDDRDSRIQAARERFLARKTKS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccgattcttcaattcgaagagaaaatcttagaaacaatagagcgaaac
ccagtcgtggtgatcattggagagaccggttcggggaagagcactcagctctctcagatg
atgcacaaaagaggctacaccaagtctggagccatcgccgtcactcagcctcgtcgtgtc
gccgcagtctccgtctcaagacgtgttgcgcaggagctcggtgttcggcttggggaagaa
gtgggctacgctattcggtttgaggatagaacttcagagaaaacatgtattaaatatctt
actgatggagttcttctccgtgaaagtctttcaaaccctgagcttaatcagtactctgtg
atcatattggatgaagctcatgaaaggagcctaaacacggatatattgcttggccttatg
agacggttgataaaaaagcgttcatcaaatctgaaggttttgatcacttcagctactctt
gatggtgagaaagtatcaagattcttcggcaattgccctatactcaacgtccctgggaag
ttattccccgtggaaatattttacagtgcagaacgcccaaaaagttatctcgaatcttct
ttcaaaacagccattgatatacatgttaaggagccagaaggtgatattttaattttcatg
actggacaggacgatatagataagctggtcaagaaattggaggagagagttcaaagcttg
gaggaagggtcttgcatggatgctataatccttcctctacatggatctctgccacctgaa
atgcaggtgcgtgtattcagtcctccacctccaaattgcagacgatttattgttgccaca
aatattgcggagacttctttaactgtcgatggtgttgtgtacgttattgattccggctat
gtgaagcaacgacagtataacccatcaactggcatgtattccctcgacattgttcaaatt
agcagggtgcaagctgatcagcgtgcagggcgagctggaagaacacgtccagggaaatgc
taccgtttatacccatccacagtttaccatgaagaactcctggatgcaacagtccctgaa
atacagcgatcttctcttggtggcagtgttctttatctgaaatcgttggacctccctgat
atgaatattctcaaatttggttttcttgaccctccttcctctgagtcattagaagatgct
cttaaacaactatttcttattgatgctattgacgaaaatgggtcaattacgagtattgga
cgaacaatggctgagcttcctttggaaccttcactctcaagaaccctaatggaggcgaat
gagtatggttgcttatcccaggctttgacggttgctgctatgctatcagcggaaaccacg
ttgttggctggtcgaagcaagagcatggagaagaagaggaagcatgaccctccttcggac
cttcctgatggttctggttggggtgatcacatccaattgctgcagatctatgaggtttgg
gatcagaccaactatgatatggagtggtgtaaagacaacaacttgcaggtgcgaggaatg
aagtttgtcagagatgtcaggaaacagttatctcaaataatgcagaagatagcaaaagga
tcccttgatgtgcaaacgaaagaaagatggaaagaaagtcgagaggattaccggaaattg
aggaaggctttgtctgttggctatgcgagccagcttgctgagagaatgattcgtcacaat
ggttaccgcactctcggtttcaaaccccaacttgttcaggtgcatccatcttgtgtgctg
agaatcgatgatgagggaatgctcccaaattatgttgtttaccatgaacttatttctacc
tcgcgcccatttatgcggaacgtgtgtgctgtagagatgccatgggtcttgcccatcttg
aagaagcttgaaaatctaaacatcaatagactcagtggtgggatggtacagtctgaagag
caaacagagggggaaaagacgacgttgctgaagaaagatgtcgatgctgctaggccacct
gatgaccgtgacagccgaatacaagcagcccgagaacgttttcttgctcgtaaaacaaag
agctag
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