Actinidia eriantha (wild kiwifruit): 130776100
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Entry
130776100 CDS
T09464
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03015
mRNA surveillance pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130776100
09123 Folding, sorting and degradation
03018 RNA degradation
130776100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130776100
03041 Spliceosome [BR:
aew03041
]
130776100
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130776100
mRNA cycle factors
Stress granule specific factors
130776100
Spliceosome [BR:
aew03041
]
Complex C
Other components
Complex C specific factors
130776100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
RRM_10
DUF4523
SET_assoc
RBD_DGKtheta
YflT
IF2_N
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
130776100
NCBI-ProteinID:
XP_057490135
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All DBs
Position
4:complement(2430672..2438359)
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AA seq
653 aa
AA seq
DB search
MAQIQVQHHAHVSAANGAAANGGGANQFVTTSLYVGDLDVNITDSQLYDLFNNLGQVVSV
RVCRDLSTRRSLGYGYVNYSNPQDAARAMEVLNFTPLNGKSIRVMYSHRDPSIRKSGSAN
IFIKNLDKAIDNKALHDTFSSFGNILSCKIATDHSGQSKGYGFVQFENEESAQNAIDKLN
GMLMNDKQVYVGHFLRKQERDIALNKTIFNNVYVKNLSESTTEEDLKKIFGEHGTITSVV
VMRDGDGKSKCFGFVNFENADAAAKAVEALNGKKVDDKDWYVGKAQKKYERELELKSRFE
QSAKEVVDKFQGLNLYVKNLDDSIDDDKLKELFSEFGTIISCKVMCDPSGISRGSGFVAF
STTEEASRALAEMNGKMIVSKPLYVALAQRKEERKARLQAQFSQMRPVPMGPSMAPRMPM
YPPGAPGLGQQLFYGQAPHAIIPPQAGFGYQQQLVPGMRPGGAPPMPNFFMPLVHQGQQG
QRPGGRRGSGPVQQAQHPMPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVSGGMLSVPYDM
GGMLPRDAGIGQPMPVLALATALANAPPDQQRTMLGENLYPLVDKLEHEHAAKVTGMLLE
MDQTEVLHLLESPDALRSKVVEAMDVLRNVAHQQANTATDQLASLSLNDHLVS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattcaggtgcagcatcatgctcacgtttcggcggcgaacggggcggcggcg
aacggcggtggtgcgaatcagttcgtgacgacgtcgctttacgttggggacttggacgtg
aacattaccgactcgcagctctatgatctgttcaacaatctgggacaagtcgtgtcggtt
agggtttgtagggacctgagcactcgccgatctctgggttatggctacgtcaactacagc
aatcctcaagatgcggcaagggcaatggaagtgcttaacttcactccccttaatggcaag
tctatcagagttatgtattctcatcgggaccccagtattcgtaaaagtgggtctgcaaat
atatttatcaagaatttggacaaggcaattgacaacaaagcattacatgatactttttct
agctttggtaacattctgtcttgcaagatagctacagatcattctggccagtctaaaggc
tatggttttgtacaatttgaaaatgaggaatctgctcaaaacgcaatagataagttaaat
ggcatgcttatgaatgataaacaagtatacgtggggcattttcttcgtaagcaagaaaga
gatattgccttgaacaagacaatttttaataatgtttatgtgaaaaatctctcggaatca
acaactgaagaggatctaaagaaaatatttggtgaacatggaacaattactagtgtggta
gtgatgagggatggagatgggaaatctaagtgttttggatttgtcaactttgaaaatgcc
gatgctgctgctaaagctgttgaggctctaaatggtaaaaaggttgatgataaggactgg
tatgtagggaaagctcagaagaaatatgaaagagagcttgaactaaaaagtcggtttgaa
cagagtgcaaaggaagtagtagacaaatttcagggtttgaatttgtatgtcaagaacttg
gatgacagcattgatgatgataaactgaaggaactattctcagaatttggcaccattatt
tcatgcaaggttatgtgcgatcctagtggaataagtagaggttcaggatttgttgccttc
tctactactgaagaagcatctcgtgctcttgcagagatgaatggtaaaatgattgtaagc
aagcctctctatgttgctcttgcccagcggaaagaagagagaaaagcaaggttgcaggca
cagttttcacaaatgcggccagttccgatgggaccatcaatggctcctcgtatgccaatg
tatcccccgggtgctccaggtcttgggcaacagttattttatggacaagctccccatgct
attattcctccccaggctggatttggctaccagcagcaacttgttcctggaatgaggcca
ggcggggctcctcctatgccaaatttcttcatgccgttggtccatcagggccaacagggt
cagcgaccgggtgggagacgaggatcaggtcctgtgcaacaagcgcagcatcctatgcca
ttgatgcagcagcagatgcttcctaggggacgtgtctatcgttatccacctggtcgcaac
atgccggacgttcccatgcctggagtttctggaggcatgctttctgttccatatgacatg
ggtggcatgctaccgcgagatgctggtattgggcagcctatgccagttctggctttggct
actgcgcttgcaaatgcaccgcctgatcagcagagaacgatgctgggtgaaaatctgtac
ccactcgtggataagctggagcatgagcatgctgccaaggtgacaggcatgcttctggag
atggaccagactgaggtcttgcatttacttgaatcaccagatgcattgagatccaaagtt
gtggaggctatggatgtcctgaggaacgttgctcatcagcaggccaacaccgcaactgat
cagctagcatctctgtccctgaatgaccaccttgtttcctga
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