Actinidia eriantha (wild kiwifruit): 130779757
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Entry
130779757 CDS
T09464
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130779757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130779757
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130779757
Spliceosome [BR:
aew03041
]
Complex C
Other components
Step II factors
130779757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
KH_DEAH11
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_22
zf-C3HC4
AAA_19
zf-C3HC4_2
HA2_C
zf-RING_UBOX
KH_1
zf-RING_2
Rcat_RNF216
IBR_1
ABC_tran
RRM_1
RsgA_GTPase
nSTAND_NTPase5
nSTAND3
ATPase
Motif
Other DBs
NCBI-GeneID:
130779757
NCBI-ProteinID:
XP_057494532
LinkDB
All DBs
Position
6:16655945..16664886
Genome browser
AA seq
1709 aa
AA seq
DB search
MNHRHHHHHHPPPHSASFRPQTPSFLVELRSCRGGFRAPDVYSLIKQCDSAPHKYFVNSS
GPIAGRLFFRRRSDAAEAVLFFWERRVAGDHLMTPVFEFSDDELNERVKCLFVSHVRSLL
HGDVMQRMERKTEALKTEVERLAALLRKPKGLALYDELQRKRKGVRDEIELNSKRMEEFR
SAMKCVLRYIEGNNWEDSSFIHEFVLFQFRDCLDWSRIHHIVMRECRRLDDGLPIYGFRV
EILHKLLSEQVIVLIGETGSGKSTQLVQFLADSEVGASGSIVCTQPRKIAAVSLAKRVGE
ETNGCYGDDSIICYPTYSSIKGFKSKVIFMTDHCLLQHYMKDKSLCGVSCIIVDEAHERS
LNTDLLLALLKDLLCQRPDLRLVIMSATVDASKLSDYFYGCGTFHVVGRSFPVEINYVPG
AYGGTSSTLKPSSGNFAPYVYDVVKLATEIHNSENKGAILAFLTSQMEVEWACENFKSQY
AVPLALHGKLSHEEQCRVFQNYTGKRNVIFATNLAETSLTIPGVKYVIDSGMVKESRFDQ
STGMNVLRVSRISQSSANQRAGRAGRTEPGKCYRIYSYCDYESMSLHQEPEIRKVHLGVA
VLRILALGIKNVLEFDFVDAPCAEAIDMAIRNLVQLRAVTLKDDALELTDDGHDIVKLGI
EPRLGKIILDCFHHQLHREGVILAAVMANASSIFCRVGTSEDKLKSDCLKILFCHSDGDL
FTLLSVYKEWESMPHGSRNKWCWENSINAKSMRRCHDTVLELENCLKNELGIIVPRNWLW
SPHIATDYDKLMKKVILSSLAENIAMFSGYDRLGYELPLTGEHFQLHPSCSLNAYGQKPS
WVVFSELLSTPNRYLSCVTAFDYDSLFSLSPPPLFNVLKIQSRKLEVRVITGFGGAVIKR
FRGKFNSNLFRLVSRIQTTFMDERIGLEIDSDKNEIHVFATSDDIEKVFSLVRDALECEI
KWLRNECSEKCLHRGGQPGVTAPLALFGAGAEIKHLELEQRCLTVDVSHSQGNTIDDKEL
LMFLENFVPGVCGFHKFAGSEQDGEYNQKWGRITFLTPDAARKAVELNGIEFCGSSLKVT
PARAYVGGDHRVSSFPAVRAKVFWPRRYSKGFAVVKCGRNDVGFIIRDCSNILIGGRLLH
CEASRKCEDAVVIRGLDRDISEPEILEILRTTTDRKILDLFLVRGAAVDDPPCGACEAAL
VKEIGPFMPSHSPLSSYCHVKVFPPEPMDCFMRALIIFDGRLHLEAAKALHHIVGKVLSG
CLPWQKIQCQQMFHSSLSCPAPVYAVIKMQLDSVFNRFKCRSGISYSLEKTEYGSYRVKI
SANATKTVAELRLPLEPLINGKVVTHAGLSPTILQLLFSRDGIMLVKSLQQETGTYILFD
RQNLNVRIFGSEDRIAMAEDKLIQSLFSLHEDKQLEIRLRDRVLPQNLMKKVVDKFGPDL
SGIKEKVPEAELSLDAKRHVICVCGNKAAKQKAEEVIYEFVHSLNVNGPGEHPGGEASPC
SICLCEVEDSYQLSACGHEFCRSCLVDQLESAIKSLDGFPISCTREGCGEHILLMDLRFL
LSIEKIEELFRASVRAFVASSGGKYRFCPSPDCPSIYQVAEPEKPGWPFACGACYAETCT
RCHLEYHPYVSCERYKEFKQDPDLSLKEWCQGKENVKRCPVCSYTIEKVEGCNHIECRCG
KHICWVCLECFCSSDECYAHLRSVHLSIT
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaccggcaccaccaccaccaccatccgccgccgcattccgcctccttccggcca
caaacgccgtcctttctcgtcgaactccgctcctgccgcggtggattccgcgcaccagac
gtctactcgttgatcaaacaatgcgattcggctcctcacaagtacttcgtcaattcctcc
ggtccgatcgccggaaggttgttttttcgtcgacggagcgacgcggcggaggccgtcctg
ttcttctgggagcgccgggtcgccggcgatcatctcatgactccggtcttcgagttttcc
gatgacgaattgaatgagagagtaaagtgcttgttcgtgtcgcatgtgaggagcctttta
cacggcgatgtaatgcagaggatggagaggaaaacagaggctttgaagactgaggttgag
aggcttgctgctctgcttcggaagccaaaaggactcgctttatacgacgagcttcagaga
aagcgaaaaggggttcgggacgagattgagttgaattcgaagagaatggaagaatttagg
tctgctatgaagtgtgttcttcgttatattgaaggaaataactgggaagactcgtcattt
attcatgaattcgtactttttcagtttcgggactgcttggattggagtagaatccatcat
attgtgatgcgcgagtgtcgcagacttgatgacgggttgccaatttacggattccgggtc
gaaatccttcacaaattgctttcagaacaggtaatagtcttgattggagagactggttct
gggaagagcacacaattagttcagtttcttgctgattctgaagtaggtgctagtggctca
attgtgtgcacccagccccgcaaaatcgctgctgtatctttggcaaaaagggttggtgaa
gaaaccaatgggtgctatggcgatgattcaatcatttgttatccaacatattcttctatt
aagggattcaagtcaaaggtaatatttatgactgaccactgtttactgcaacactacatg
aaagacaagagtctatgtggagtttcatgcatcattgtagatgaagctcatgaaaggagc
ttgaatactgatctcttgctggctttgttaaaagatctactttgtcagcggcctgattta
aggcttgtaataatgtctgcaacagttgatgcaagcaaactttcagattacttctatggt
tgtggaacctttcacgtggttgggagaagctttcctgttgaaatcaactatgttcctggt
gcatatggaggaacttctagcactttaaagccaagttctggtaattttgctccatatgtt
tatgatgttgttaagttggcgactgaaatccataactcagagaataaaggggctattctt
gcctttttgacttctcaaatggaagtagaatgggcttgtgaaaactttaaatctcaatat
gctgtcccactagctttacatggaaagctatcccatgaagagcagtgtcgtgtattccag
aactacactggaaaaagaaacgttatttttgccacaaatttagcagagacatccttgacc
attcctggtgtcaaatacgtaattgattctggcatggtaaaagagagcagatttgatcaa
agtactggtatgaatgttctaagagtttccagaatcagccagagttcagctaaccagcga
gccggccgagccggccgaacagaacctggaaagtgttaccgaatttactcatactgtgat
tatgagtcaatgtctttgcatcaggaacctgaaattcgtaaagttcacctaggtgttgca
gttctgagaattcttgctttgggcattaagaatgtactggaatttgactttgttgatgcg
ccttgtgctgaggcaattgacatggcaatcagaaatcttgtacagttacgggctgtcaca
ttgaaagatgatgctttggaactaactgatgatgggcatgatatagttaaattgggtatt
gagcctcggcttgggaaaattattcttgattgttttcatcatcagttgcacagagagggt
gtcatacttgctgctgttatggcaaatgctagtagcatattttgcagagttggtaccagt
gaagataaattaaaatctgattgtcttaagattctattttgccatagtgatggagatcta
ttcacgctgctttctgtctacaaggaatgggaaagcatgcctcatgggagtcgaaataaa
tggtgttgggaaaatagcatcaatgcaaagtctatgcggagatgccatgatactgtgcta
gaattagaaaattgccttaaaaatgagctaggaatcattgttccacgtaactggctatgg
agtcctcatattgccactgactatgataaattgatgaagaaggttatactttcatcctta
gcagaaaatatagccatgttttctggatatgatcgtcttggttatgagttacctttaact
ggagaacattttcaacttcatccttcatgctcattgaatgcatatggtcagaagcctagt
tgggttgttttttctgaacttctgtccacaccaaatcgatatttgtcttgtgtgactgct
tttgactatgactctttgttttcccttagtcctccacctctattcaatgtcttgaagata
cagagtaggaaactggaagtaagggtgattactggatttggaggtgcagttataaagaga
ttccgcgggaagttcaacagtaatttatttcgtcttgtttctcgtattcaaacaactttc
atggacgaacggattggtctagaaattgattctgataagaatgagatacacgtatttgca
acgtcagatgacattgaaaaggttttcagcctagtcagagatgccttagaatgtgaaata
aaatggttgagaaatgaatgctcggaaaaatgcttgcatcgtgggggccagcctggtgtt
accgctccattggcattgttcggagctggtgctgaaattaagcatttggagttggaacag
agatgtttgactgtcgatgtgtctcattcgcagggcaataccattgatgataaggaactt
ttaatgttcttagagaattttgtccctggagtatgtggttttcacaagttcgctggcagt
gaacaagatggtgaatacaatcaaaagtggggcaggataacttttcttactcctgatgca
gctcgaaaagcagttgagttaaatggaattgaattctgtggctcttcactgaaagtgacc
cccgcacgggcttatgtgggaggtgatcatagagtgtcatcatttcctgctgtcagagcc
aaagtgttttggccccgtaggtacagcaagggttttgcagtggtgaaatgtggaaggaat
gatgttggttttataattcgtgattgctctaacattctgattggaggcaggcttcttcac
tgtgaggccagtagaaagtgcgaggatgctgttgtcatcagaggtttagatagagatatt
tctgaaccagaaattttagaaatccttagaacgactacagataggaaaattttagatttg
ttcctggtaagaggagcggctgtggatgatccaccatgtggtgcttgtgaggcagcattg
gttaaagaaattggtcctttcatgcccagccacagcccattaagcagttattgtcatgtc
aaggtcttccctcctgaaccaatggattgcttcatgagagctttgattatttttgatgga
agactgcatctggaggcagccaaagctttgcatcacattgtagggaaagtactttctgga
tgccttccttggcagaagatacagtgtcagcagatgttccatagttctttgtcatgccct
gctcctgtctatgcagtcatcaagatgcaactggattctgtattcaaccgctttaagtgt
cgtagcggtatatcttacagtttggaaaagactgaatatggctcctatcgggttaagata
tctgccaatgctacaaagacagtggcagagttgaggctgccactggagccgctgataaat
ggaaaggttgtaactcatgccggcctctcgcctaccatcctacaacttctgttctcccga
gatggcattatgctcgtgaaatcgctacagcaagaaacaggaacttacattctctttgac
aggcagaacctaaatgtaaggatcttcggctcggaagacaggattgctatggctgaggac
aaactgatacaatctcttttttctctccatgaagacaaacaactagagatccgccttcga
gacagagttttgccacagaaccttatgaaaaaagtggttgacaagtttggtccagacttg
agtggcattaaagagaaagtgcctgaagctgagttgagccttgatgccaagcgccacgtc
atctgtgtttgtggaaacaaggcggcgaagcagaaagcagaggaggtaatttacgaattt
gtccactctcttaatgttaatggtccaggagagcatcctggaggtgaggcctccccttgc
agtatctgcttgtgcgaggtcgaggactcttatcagttgtcagcttgtggacatgagttc
tgccgatcgtgcttggttgatcagttagaatctgctattaaaagtcttgatgggttccct
ataagttgcacccgcgagggttgtggggagcacattttgctgatggatttgaggtttctc
ctatccattgaaaagatagaagaactcttcagggcctctgtgagggcatttgtggcatcc
agcggaggtaaataccgattttgcccctctcccgactgcccttccatttaccaggtagca
gaacccgagaaacccggttggccatttgcatgtggggcttgttacgcagaaacatgtact
aggtgtcacttggagtaccacccatacgtgtcgtgtgaaaggtacaaggagttcaagcag
gaccctgacttgtcactgaaagaatggtgccagggaaaagagaatgtcaagaggtgccca
gtctgcagttacacgatagagaaggtggaaggttgcaaccacattgagtgccgatgtggg
aagcacatttgctgggtgtgcttggaatgcttctgcagcagcgatgaatgctatgcacac
ttgaggtctgtacatcttagtatcacatga
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integrated database retrieval system
