Actinidia eriantha (wild kiwifruit): 130780248
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Entry
130780248 CDS
T09464
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130780248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aew03021
]
130780248
03019 Messenger RNA biogenesis [BR:
aew03019
]
130780248
Transcription machinery [BR:
aew03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130780248
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130780248
U7-dependent histone pre-mRNA processing factors
130780248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
130780248
NCBI-ProteinID:
XP_057495154
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All DBs
Position
7:9928420..9934049
Genome browser
AA seq
695 aa
AA seq
DB search
MASTGQPQSSLKRRESSGTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL
SDYVRVSKVSVEDMLYDEQDILRSMDRIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRHIREKRFTDAIH
STISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYIN
AMNERIRNQFANSNPFDFKHISPLKSIENFEDVGPSVVMASPGGLQSGLSRQLFDKWCSD
KKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLITLFADGNTKIISPKNCQSVEMYFNSEKMAKTIGKL
AEKVPEIGETVSGLLXKKGFTYQIMAPDDLHIFSQLSTANVIQRISIPYSGAFGVIKHRL
KQIYESVESSVDDESGVPTVRVHDRVTVKQESEKHISVHWNGDPISDMVSDSIVALVLNV
SREMPKVVVESETEINEQENGKKAEKICHALLVSLFGDVKPGENGKLVISVDGYMAHLDK
QSGDVESENEGLRERVRTAFRRIRSAVKPIPLTTA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacaggacaacctcaatcgtctctgaagagacgtgaatcgtctggaacaaga
gaaggggatcagctgattataacccctttaggtgctggcaatgaagtgggtcgctcctgc
gtttacatgtcttacaaaggcaaaacgattctgtttgattgtggaattcaccctgcttac
tcggggatggctgctttgccgtactttgacgaaattgatccttccacaattgatgtgctt
cttgtcactcactttcacttggatcatgctgcttcccttccatattttttggagaagacc
acattcaaaggccgagtttttatgactcatgcaacaaaggctatctataagttgctttta
tcggattatgtgagagtgagcaaagtttcagttgaagatatgctgtatgacgaacaagac
attcttcgctccatggataggattgaggttattgacttccatcagactttagaagtaaat
ggtatccgcttctggtgttacactgctggccatgtacttggtgctgccatgttcatggtt
gacattgccggtgtccgagtcctctacactggagactattcacgtgaagaagatcggcat
ctacgagctgctgagcttccacaattttcccctgatatttgcattattgaatccacttat
ggtgttcaactccatcaaccacgacacatccgagagaagcgcttcactgatgccattcac
tctaccatttctcaagggggtcgtgtcctaatccctgcattcgccctcggccgtgcccaa
gaactcctactgatccttgatgagtattggtcgaaccatcctgagctccacaatattccc
atatattatgcttcccccctcgcaaaaagatgcatggctgtttaccagacctacatcaat
gctatgaacgagaggatccggaatcaatttgccaattcaaacccatttgatttcaagcac
atatctccattgaaaagtattgagaattttgaagatgtaggaccatctgtggtgatggca
agtccaggtgggctgcagagtggattgtctcgacagctatttgataaatggtgctctgat
aagaaaaatgcttgtgttatacctggatatgtggtagagggaacgcttgcgaaaaccatc
attaatgaacccaaagaagttaccctcatgaatggtctgacggctcctctcaacatgcag
gtccactacatttccttctcagctcacgcagattacgctcagactagtaccttcttgaaa
gaacttatgcctcctaacattattctcgttcatggagaagctaatgagatgggaaggctc
aagcagaagcttattactttatttgctgatggtaataccaaaattatttcccctaagaac
tgccagtctgtcgaaatgtacttcaactccgagaaaatggcaaaaactataggaaaactg
gctgagaaggtgccagaaattggtgaaaccgtcagcggcttattgngtaaaaaggggttc
acttatcagatcatggcacctgatgatctccatatcttctcgcagctatccaccgcaaac
gtcattcaaaggatttccataccttactctggcgccttcggtgtgataaaacacaggctc
aagcagatatatgagagtgtagagtcttcagtggatgatgagtctggggttccaactgtg
cgagtgcatgatcgagtaacagttaagcaggagtcggagaagcatatctcggtgcattgg
aatggggatcctataagtgacatggtctcggactcgattgtggctctggtgctaaatgtc
agccgagagatgcccaaagtagttgtagagtcggagaccgaaataaatgaacaagaaaat
gggaagaaggcggagaagatctgccatgccctgcttgtttcgcttttcggagatgtgaag
cctggagagaatgggaaactggtgataagtgtcgatggatacatggcacatctcgataaa
cagagtggtgacgttgagagcgaaaatgaaggtcttagggaaagagtaaggacagcgttc
cgtagaattcgaagtgctgtgaagccaatccccctcactactgcttaa
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