Actinidia eriantha (wild kiwifruit): 130780807
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Entry
130780807 CDS
T09464
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130780807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130780807
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130780807
mRNA degradation factors
5'-3' decay
Decapping complex
130780807
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
130780807
NCBI-ProteinID:
XP_057495805
LinkDB
All DBs
Position
1
Genome browser
AA seq
835 aa
AA seq
DB search
MFPSPENALFDASQYAYFGQKAMDEVELGGLEDEEDGSPAVGYGDDEYHLFDKEEGTGSL
SDIDDLTTTFSKLSKVVTGPRHPGVIGDRGSGSISRESSSVAEWAQEGDFPDWLDQHVID
TENKRWSSMPHSSSEHLADTKPLYRASSSPLQHQEQQHFSRESFEEGKKWSSQPHTTSLH
LAETKPLYRTSSYPLQQQQQHFSSEPILVPKSSFTSFPPPGGGSQQASPHNHSHRLNISS
LTSGYRLPFSAPNSPLSRSTLHSAGLHHGLHYGGDLSQLNPSGFSINNRTQNHWPNHAAV
FHGDQSNVFNATLQPQFPHQKGGLSQHLIPTQQQQKMHLPLEPSLAYLSAMQSQMFNAMP
SLPSHFSKYGSFDARDHRHKSSQRGRLNTRFSQQGSHASNQKTENNCPQFRSKYMTAEDI
ENILRMQHTATHGNDPYVYDYYHQARLAKKAAESGSEHRFCPVHPKELPSRSRNNAESHP
HLHVDALGRVSFSCIRRPPPLLEVDPPSSAFGNGSTEQVSEKPLEEEPMLAARITIEDGL
SLLLDIDDIDRLLKFSQPQDGGANLRRRRLVLLEGLAASLQLVDPLRKSGNLVGLGPKDD
VVFLRLVSLPKGRKLISRYLQLLFPGGDLARIVCMAIFSHLRFLFGGLPSDSGASETITD
LAKIVSTIVNGMDLNALSACLAAVVCSPEQPPLRPLGSPAGDGASVILKSVLERATQLLT
DPHAATNCSIPNPALWQASFDAFFDLLTKYCVSKYDSLVQSVYAQTQPSSEIISSEAARA
ISKEMPVELLRASLPHTDEHQRKLLLDFGQQTMPVSGFIAHGGCNGRVTPESVKG
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgttcccttccccagaaaatgcactctttgacgcatcacaatatgcatattttggtcaa
aaagccatggatgaagttgagttgggaggtttagaagatgaagaggatggtagtcctgca
gttgggtatggtgatgatgagtaccatctctttgataaggaagagggaactggatctttg
tctgatatagatgatctgacaactacattttcaaagttgagcaaagttgttactggacca
agacaccctggggtaattggtgatcgaggatctggatcaatttcgagggaaagttcatct
gttgctgaatgggcacaggagggagatttccctgactggttagatcagcatgtgattgat
acagaaaataagagatggtcttcaatgccacatagctcttcagaacatcttgcagataca
aaacccttgtacagagcatcgtcatctcctctgcagcatcaagagcagcaacacttttcc
agagagagtttcgaggaaggcaagaaatggtcatcacagccacatactacttcgctgcat
ctcgcagaaacaaaacccttgtacagaacatcgtcatatcctctgcagcaacagcagcag
cacttctccagcgaacctattttagtgcccaaatcatctttcacttctttccctccaccc
ggtggcggatctcaacaggcttcaccacacaaccattcgcatcgcctaaatatttcatct
cttaccagcggttatcggttacccttttcggcccctaactctcctttatctaggtctaca
ctacattcagctggcttgcatcatgggctgcattatggtggagatttgtctcaattaaac
ccatctggtttttctattaataaccgaacacaaaatcactggcctaaccatgctgccgtg
ttccatggggaccaatccaatgtctttaacgctactttgcaaccacaattccctcaccag
aagggaggtttgtcccaacatttaatacccacgcagcagcagcagaaaatgcatcttcca
cttgaaccatctttagcctatttatcagcaatgcaatcgcaaatgttcaatgccatgcct
tctttgccctcacatttcagtaaatatggatcgttcgatgcgagagatcatagacataaa
tcatcacaaagaggtagactgaatacccgtttctctcagcaaggctctcatgctagtaac
cagaagactgaaaacaattgcccacagtttagatccaagtatatgactgccgaagacata
gagaacattctcagaatgcagcataccgccacacatggcaatgatccatatgtgtatgac
tattatcaccaagctcgtcttgcaaaaaaagctgctgaatcaggatcagaacatcgtttc
tgcccagtccacccgaaggaacttccttctcgatcccgtaacaacgcagaatcacatccc
catctccatgttgatgcacttgggagggtctccttctcttgcatacgtaggccgcctcct
ctccttgaagttgaccctccttcctctgcttttggcaatggcagtactgagcaagtttct
gaaaagccactggaagaagaaccaatgcttgcggctagaatcaccattgaagatggtctt
tctcttcttctcgatattgatgacattgaccgactccttaaatttagtcagccacaagat
ggtggggcaaacctaagacgtaggcgacttgtcctgttagaaggcttggctgcttcgctt
caacttgttgacccacttagaaaaagtgggaacctagttgggctgggccccaaagacgac
gttgtgttcttacggttagtttcccttccaaagggtcgaaagctcatctctaggtacctt
cagcttctcttccctggtggcgaccttgctcgaatcgtttgcatggctatcttcagtcat
ttgaggtttctatttggtggtcttccctctgattcaggggcaagtgaaacaatcactgat
cttgcaaaaatagtttccacgattgttaacggtatggatcttaatgctcttagtgcttgt
cttgccgcagtagtttgttcaccggagcagccaccgctccgtccccttggaagcccagct
ggggatggagcttctgttatattaaaatctgtactggagagggcaactcaacttttaacc
gaccctcatgctgctaccaattgtagcattcccaatcctgcgctttggcaggcctcattt
gatgccttctttgatcttctgaccaagtactgtgttagtaaatacgatagtttagtgcaa
tcagtgtatgcacagacccagccaagctctgagattattagttccgaggcggcgagagct
ataagcaaagaaatgcccgtcgaacttctacgtgctagtcttccacacaccgatgagcac
cagaggaagctgctcttagattttggtcagcaaaccatgcccgtctccggatttattgct
catggagggtgtaatggtcgagtaactcctgaatcggtgaagggctaa
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