Actinidia eriantha (wild kiwifruit): 130781050
Help
Entry
130781050 CDS
T09464
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130781050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130781050
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130781050
Spliceosome [BR:
aew03041
]
Complex C
Other components
Step II factors
130781050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
OB_NTP_bind
IBR
AAA_22
AAA_19
HA2_C
IBR_1
IBR_2
HA2_N
ResIII
ABC_tran
Helicase_RecD
Arc_MA
AAA_29
Motif
Other DBs
NCBI-GeneID:
130781050
NCBI-ProteinID:
XP_057496090
LinkDB
All DBs
Position
7:complement(11318794..11326473)
Genome browser
AA seq
1733 aa
AA seq
DB search
MNRSPPLPITARGGGGGILRRGVVPANFRSYREWKPQFTPNQRLDRPPGPYGFTVELRSD
AQRFVKADAEAIIAKCKCECKLETFEFHCSGSVAASLYFHQWIDALEATVYLWGTLLDGT
HSFTPRLVPSRCDMNKLWDRLKALFADRVKGLMEGDLVKKWKKKLGFVVDEISGIDALVK
KHNRIHVFEELSRKKAGLESEKGLIERRIKEFKSAMKCILNHLEGTSSVACEDEGFEVFR
FSRLYEWVRIHCLIRRECRRLEDGLPIYAFRREILQEIYNQQVLVLIGETGSGKSTQLVQ
FLADSGVAANNSIICTQPRKLAAISLAQRVREESCGCYQDNSVISYPTYASAQHFNSKVI
YMTDHCLLQHYMKDKKLSGISCIIVDEAHERSLNSDLLLTLIKNLLRQRHDLRLIIMSAT
ADANQLAEYFFGCGTFHVVGRNFPVDIRYVPCESAGTSDTASIASYASDVVRMVTEIHRT
EKEGTILAFLTSQMEVEWAREKFKFPSAVALALHGKLSHEDQIHVFLDYPGKRKVIFATN
VAETSLTIPGVKYVVDSGMVKESRFEPGTGMNVLKVCRISQSSANQRAGRAGRTEPGRCY
RLYSECDFELMPPHQEPEIRRVHLGVAVLRILALGVADVQSFDFVDAPCATAIEMAVRNL
IQLGAIVLKNDVLELTKDGLQLVRLGIEPRLGKIILQCFENRLGKEGLVLAAVMANASSI
FCRVGNEEDKLKSDCLKVQFCHRYGDLFTLLSVYKEWEGVPREKKNLWCWENSINAKSMR
RCQDTVTELETCLQNELNLIIPSYWRWNPQVATEHDKYVKKAILSSLAENVAMYSGYDQL
GYEVALTGKHVQLHPSCSLLIFGQRPSWVVFGDLLSVSSEYLVCVTAFDYEDLPTLCPPP
LFDTCKMGSQKLQVRVLTGFGCTLLKKFCGKSNNNLHQLVSHLRTACTDERIGIEVNVDR
NEIQLFASSQDIDNVICLVHDVLEYERKWLQNECMEKCLYHGGPSLSPSVALFGAGAEIK
HLELEKRCLTVDVFHSNVSAVDDKELLAFLERMASGSICAFHKFTGVGQDSDEKDKWGRI
TFLTPDAAKKVSDSSPVEFNGDRLDIIPSLSTFGRDHKMFSFAAVRAKVHWPRRSSKGLA
IVKCDRKDVEFMVDDFSSLVIGGKYVRSAASIKYADSVVISGLDRGLSEAEILDALRTAT
DRKILDFFLVRGDAVENPPCRSCEEALLREISPLIPKKNPHVNCVRVQVFPSEPKDAFMR
AMIMFDGSLHLEAAKALEEIEGKVLPGCLPWQKIKCQQLFNSSVSCPAPVYLVIKEQLDN
LLAILRHRKGAECHLDRNENGSYRVKISANATKTVADLRRPLEQLMRGKTLDHPNLTPTV
LQLLFSRDGITLLKTLQRETGTCILFDRHKLSVRIFGSSKKIDVAEQRVVQSLLTLHESK
QLEIHLRGGSKPPDLMKEVVKKFGPELQGLREKFPDAEFTLNSRRHIISIFGNKELKQKV
EDLIFELVETSAASVQTVDKEAACPICLCEVEDGYQLESCTHMFCRLCLVEQCESAIKSQ
DSFPMRCMREGCGAHILLTDLRSLLSGEKLEELFRASLGAFVASSGGAFRFCPSPDCPSV
YRVADPGTEGKPFVCGACYVETCTRCHLEYHPFLSCEKYQEFKDDPDSSLKAWCEGKDHV
KNCPICRYTIEKIDGCNHIECRCGKHICWVCLAFFASSDDCYGHLRSVHQAII
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgatctcctcctctccccatcaccgcgcgcggcggcggcggggggattctacgg
cgaggcgtcgttccggcgaacttccggtcgtaccgcgagtggaagccccagttcacgccg
aaccaacgcctcgaccgccctccgggaccctacggcttcaccgtagagctccgctccgac
gctcaacgattcgtcaaggccgacgccgaggccataatcgccaagtgcaagtgcgagtgc
aagctcgagacgttcgagtttcactgctcgggctccgtggccgcgagcttgtattttcat
cagtggatcgacgcgctcgaggcgacggtgtacctgtgggggactctgctcgacgggact
cactcgttcacgcccaggctcgtgccgagccggtgcgatatgaacaagctttgggatcgg
cttaaagccctgttcgctgatcgtgttaagggattgatggaaggggacctggtgaagaag
tggaagaagaagttagggtttgtggttgatgagatttcaggaattgatgcgctggtaaaa
aagcataatcggattcatgtttttgaggagctttcgaggaagaaggcagggttggaatct
gagaagggtttgatagagagaaggattaaagagtttaaatctgcgatgaagtgtattctt
aatcatcttgaagggacatcatcggttgcctgcgaagacgagggttttgaggtgtttagg
ttcagcagactgtatgagtgggttcggattcattgtctgatcagaagggaatgcaggagg
ctagaggatggcttgccaatttatgcctttcgccgggaaattctccaagaaatctataac
caacaggtgttggtattgattggagagactggttcaggaaagagtacgcagttggttcag
tttcttgctgattccggagtagctgctaacaactccattatatgcactcagccccgcaaa
cttgcagctatctcattggctcaaagagttcgtgaggaaagttgtgggtgctatcaagat
aattcagttatatcttatccgacctatgcatctgctcagcattttaattccaaggtaata
tacatgacggaccattgcttattgcagcactacatgaaagataagaaattatctgggatt
tcatgcatcatagttgatgaggcccatgaaagaagcctaaacagtgatcttcttttaacg
ttgataaaaaatttactgcgtcagaggcatgatctgaggcttatcataatgtctgcaaca
gctgatgccaaccagcttgctgagtattttttcggttgtggaacctttcatgtggtaggc
agaaactttccggttgacatcagatatgttccgtgtgaatctgcaggcacttctgatact
gctagtattgcttcatatgcttctgatgttgtgaggatggtgactgagatccatagaacg
gagaaagagggaacgattcttgccttcttaacttctcagatggaagtagaatgggcacgt
gaaaagttcaaatttccctctgcggttgcattagctttacacggaaaactttctcacgaa
gatcaaattcacgtgtttcttgactacccgggtaagagaaaagttatatttgccacaaat
gttgctgagacctcattgaccattccaggggtgaagtatgtggttgattctggcatggtg
aaggagagtaggtttgaacctggcactggtatgaatgtccttaaagtttgcagaattagc
cagagttccgcaaatcaacgagctggtcgtgctgggagaactgaaccaggaaggtgttat
cgactttattcggaatgcgattttgaattgatgcctcctcatcaggaacctgagattcgt
agggttcatcttggtgtggcggttctaaggattcttgctttgggcgtggcagatgtgcag
agttttgattttgttgatgctccttgtgcgaccgctattgaaatggccgtcagaaatctc
attcagttaggagccattgtattgaagaatgatgtattggaattaacaaaagacggactg
caattggttagattgggtattgaacctcggctggggaaaattattcttcaatgcttcgag
aatcgcttgggtaaagagggccttgttcttgctgctgttatggcgaatgccagtagcata
ttttgcagagttggtaatgaagaagataagcttaaatctgattgccttaaggttcaattt
tgtcatcgatatggtgacctcttcactctgctctctgtttacaaggaatgggaaggtgtg
cctcgagaaaagaaaaatttgtggtgttgggagaacagcatcaatgccaaatccatgcgg
agatgccaagacacagtaactgaattggaaacctgtcttcaaaatgagcttaatcttatt
attccaagttactggcggtggaatcctcaggtggctactgaacatgataaatatgtaaaa
aaagctatactctcttcccttgcagagaatgtagctatgtactctggatatgatcaactt
ggatatgaggtggcattaactggaaagcatgttcagttacatccttcatgttcattgcta
atttttggtcaaaggcctagttgggttgtttttggtgacctactatcagtatcctctgaa
tatttggtctgtgtaactgcttttgattatgaagatttgcctaccctttgccctcctcct
ctgtttgatacctgcaaaatggggagtcagaaactgcaagtgagggttttgaccggtttt
ggctgtacattgctaaaaaaattctgtgggaagtccaataataatctgcatcaattagtt
tctcacttaagaacagcttgtacggatgaacggattggcattgaagttaatgttgaccgg
aatgagattcaattatttgcctcgtcacaagacattgataatgttatttgccttgtacat
gatgttttggagtatgaaagaaaatggttgcaaaatgaatgtatggagaaatgcttatat
catggtggacctagtctctcaccttctgttgctttgtttggagctggtgcggagataaag
catctggagcttgagaagagatgtttgactgttgacgtgttccattcaaatgtgagtgct
gttgatgataaggagcttttggcttttttggagagaatggcctcaggtagtatttgtgcg
ttccacaaattcacaggtgttggacaagatagtgatgagaaggacaagtgggggagaata
acatttcttacacccgatgctgctaagaaagtttctgactccagtccagtcgaattcaat
ggagaccggttagacataattccttcactgagcacgtttggacgtgatcacaaaatgttc
tcatttgctgctgttagagcaaaagttcattggccgcgcagatccagtaaagggcttgca
attgtcaaatgtgataggaaggatgttgaattcatggtcgatgatttctcgagcttggta
attggaggaaagtatgtacgatctgcagctagcataaagtacgcagacagtgtagtgata
agtggactcgatagaggactctctgaagctgaaattttagatgcattaaggactgcaacc
gataggaaaatcttggacttcttcttggtgagaggagacgctgtggaaaaccctccttgt
agatcttgcgaagaagcacttctcagagaaatatccccgttgatccctaagaagaaccct
catgtcaattgtgtacgagtccaagtcttcccatcagaacctaaagatgctttcatgaga
gccatgataatgtttgatggaagtctacatttggaggcagcaaaagctttggaggaaatt
gaagggaaagtattgcctggatgtcttccatggcagaagataaagtgtcagcagttgttt
aacagctctgtatcctgccctgcacctgtctatttggttatcaaggagcaattggataat
ctcctcgcaatattgcgacatcgaaagggtgccgaatgccatctagacaggaatgagaat
ggctcctatcgggtgaagatttctgccaatgctacaaaaaccgtagcggatttgaggcgt
cctctggaacagctcatgagagggaagaccttagaccatcctaacctcactccaacagtt
ctacagctattgttttcgagagacggcataactctcttgaagacacttcagcgagagacg
ggaacctgcattctctttgacaggcataagcttagcgtgaggatctttgggtcttcaaaa
aagatagatgtagccgaacagagagtagttcaatcccttctgaccttacacgagagcaag
caactcgaaatccacctccgaggcggatccaagcctcctgatttaatgaaggaagtagtt
aagaaatttgggccggaacttcaggggctcagagaaaaattccccgatgctgaatttact
ctcaactctcgccgccacatcatatcaattttcggtaacaaagaattaaagcaaaaagtc
gaagacttaatttttgaacttgtagagacgagtgctgcatcagttcagacggttgacaag
gaagccgcttgtccaatttgcctgtgtgaagtggaggatggttaccagcttgaaagctgt
acccacatgttctgccgcttgtgcttggtggagcagtgcgagtccgccatcaaaagccaa
gacagtttccctatgcggtgtatgcgcgagggttgtggggcccacattttgcttactgac
ctgaggtctctattgtcgggagagaagctagaggaacttttccgggcttctttgggcgca
ttcgtggcatcaagtggcggcgccttccggttttgcccttcgcccgactgcccttcggtt
tatcgggtggcagaccccggtaccgaaggaaaaccgttcgtgtgcggggcgtgttacgtg
gagacgtgtactaggtgtcacttggagtaccacccgttcttgtcgtgtgagaaataccag
gaattcaaggacgacccagattcgtctttgaaggcgtggtgtgaggggaaagatcacgtg
aagaactgccccatctgcaggtacacgatcgagaagatcgacggctgcaaccacattgag
tgtaggtgtgggaagcatatatgctgggtctgcttggcattctttgcgagcagcgacgat
tgctacgggcatttgaggtctgttcaccaggccattatttaa
DBGET
integrated database retrieval system
