Actinidia eriantha (wild kiwifruit): 130782458
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Entry
130782458 CDS
T09464
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130782458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130782458
03036 Chromosome and associated proteins [BR:
aew03036
]
130782458
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130782458
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130782458
mRNA degradation factors
5'-3' decay
Decapping complex
130782458
Chromosome and associated proteins [BR:
aew03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130782458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130782458
NCBI-ProteinID:
XP_057497762
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All DBs
Position
8:16299979..16313170
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AA seq
490 aa
AA seq
DB search
MNTRGRYPPGIGGGGGRGGGVNSNPNFQPRNFQQQYVQRSPMQNHQQFQSQQQQQQQQQQ
WLRRNQLGAELSVDEVEKTVQSEAVESSSQDWKAQLRIPPPDTRYRTEDVTATKGNEFED
YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ
DNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVG
TPGRILDLAKKGICVLKDCSVLVMDEADKLLSPEFQPSVEQLIHFLPANRQVLMFSATFP
VTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ
AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP
PHIDQAIYCQ
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcgaggacgatatccgccggggatcggtggcggaggtggccgtggcggtggc
gtgaactcgaaccctaattttcagccgaggaactttcagcaacagtatgtgcagaggagt
ccaatgcagaaccatcaacagtttcagagccaacaacagcagcaacagcaacagcaacaa
tggttgaggaggaaccaattgggggccgagttgagtgttgacgaagttgagaagaccgta
caatcggaggctgttgaatcaagttcacaagattggaaggcacaattaaggattccacca
cctgatactcgatacaggaccgaggatgtgacagctaccaaggggaatgagtttgaagac
tattttctaaaacgtgagctactgatggggatatatgagaaggggtttgaaagaccatct
cctattcaagaggaaagtattccaatagctcttactggaagcgatattctagcgagggct
aaaaatggaactggaaaaactgctgccttttgtattcctgccttggaaaaaattgatcaa
gataacaatgttatccaagtcgttatacttgttccgacacgagaattagctttgcagaca
tcccaagtctgtaaggagcttgggaagcacttgaaaattcaagtgatggttactactggt
ggaaccagcttaaaagatgacataatgcgtttgtatcaaccagtgcacctacttgtcgga
actcctggaagaatactagaccttgctaaaaagggtatttgtgttttgaaagattgctca
gtgctcgtcatggatgaggctgataaactgttgtctccagagttccaaccttcagtggag
cagttgattcattttctacctgcgaatcgtcaagtattgatgttttcagccacatttcct
gttactgttaaggattttaaagatagatatttacacaagccctatgttattaaccttatg
gatgagcttactcttaagggtattacacaatattatgcttttgtagaagaaagacagaaa
gtccactgcttaaacactcttttctcaaagcttcaaatcaaccaatccatcattttctgc
aattcggtaaatcgggtagaactgctggccaaaaaaattacagagcttggttattcttgc
ttctacattcatgcaaagatgcttcaagaccatcgcaacagggtattccatgatttccga
aatggtgcatgcaggaatcttgtttgtacggatctgtttacaagggggatagacattcaa
gctgtcaatgtcgtgattaatttcgattttcccaagaattcagaaacttatctgcacaga
gttggtcgatcagggaggtttggacaccttgggctagcagtgaatttgattacttatgag
gatcgtttcaacttgtataggattgagcaagaacttggaacggagataaagcaaattcct
ccgcatatagatcaggctatttactgccaatga
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