Actinidia eriantha (wild kiwifruit): 130783478
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Entry
130783478 CDS
T09464
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130783478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aew03021
]
130783478
03019 Messenger RNA biogenesis [BR:
aew03019
]
130783478
Transcription machinery [BR:
aew03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130783478
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130783478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
130783478
NCBI-ProteinID:
XP_057499133
LinkDB
All DBs
Position
8:complement(25929880..25939383)
Genome browser
AA seq
1039 aa
AA seq
DB search
MDEERFVSVRENPRFLGGLGNGNNNGGNKAVTGEVAKAVPSILDRFRALMKEREEEIMVF
GDDEVPPPSTEEIVKIYELVLGELTFNSKPIITDLTIIAGEQREHGEGIADAICARILEV
PVEQKLPSFYLLDSIVKNIGREYVRYFSARLPEVFCEAYRQVHPNLHPAMRHLFGTWLTV
FSPSVLRKIESQLQFSPSANHQSSVLKASESPRPTHGIHVNPKYLEARRQIGHSTPDGNN
QRVRGTPTLKIYGQTTASGYDEYNSDNAEFLSSEVGAQRLSSTGYAGRTSFTLGAEKLLP
SPAVRLGKSSSPFRIEHGRSLSPPVDEVVVDNSPRRVVERPASSHFGFGYGNGRITGREE
LSDRPRSHLSDGSHRRSETTAAYNNGLELRRPRALIDAYGNDQRRETQNYNPLKVDINGI
ENKMGAKTWQNTEEKEFDWEDMSPTLVDRSQSKNPLSSFIPPLESLRTRPGHAKHDTAPL
DSDFRRSNRSSQAQISAVNDSSIIHENAVPIVSSVCGSSSKITGLHDDPSQFLGSRYPQE
AFAHYIAHSSRHPLSSEGGGANFQMLPSSSANQKPLINSFPDADAQLQGSSAIASRMGAE
SIDSWKSESLATAVPPLAGAWPPINIQKTHSFPVLPPLPQQKKSKSQFDQMNASNTVMNQ
GLNKSFLPEHQFNSIENKALSSIKLPSFPNQQALAVPVNPQNREQVTPTQPKLLSQEVRR
NLVPPPAIPAVVSMPSLLPPLAHGYIPQGRNTATSNVMSNPILGLHPSMPFLNTPSSSMH
LHGAGFPPLPQGPRPDSSHMIPISHNSGSIAPNPQGGGALSGLISSLVAQGLISLTNQSL
VQESVGLEFNPDVLKVRHESAITALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRIS
KTRKQKPSRKWFVSVNMWLTGAEALGTEAVPGFLTAESDVEKKDDEEFAVPADEDQNVCA
LCGEPFDDFYSDEAEEWMYRGAVYMNAPSGSAAGLDRSQLGPIVHAKCRSESSVVSPEVF
GQDEGGYTEEGSQQKRLRT
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagaggttcgtatcggtgcgagaaaaccctagatttctcggcgggttaggc
aacggtaacaacaacggcggcaataaagccgtgaccggtgaggtggcgaaggctgtgcct
tcgattctggatcggttcagggctctgatgaaggagagagaggaggagattatggtgttt
ggggacgacgaggttccgccgccgagtactgaagagattgtgaagatttacgaattggtt
ttgggggagctcactttcaattcgaagccgatcatcaccgatctcacgataattgccggc
gagcagagggagcacggcgagggcatcgcggatgcgatttgcgcgaggattctcgaggtc
ccggtagagcaaaaactgccttctttttatcttttggacagcattgtcaagaatattggc
cgggaatatgttaggtacttttctgcccgtttgcctgaggttttctgcgaggcgtacagg
caagttcaccctaacttgcatcctgccatgcgccacctttttgggacctggttgacagtg
ttttcaccttcagttcttcgcaagattgagtcgcaattgcaattttctccttcggcaaat
catcagtcttctgttctgaaggcctctgaatctcctcgaccaactcatggaatacatgtc
aatccaaaatacttggaagcaaggcgtcagattggacattcaactcctgatggtaataat
caacgtgtgagagggactccaactttgaagatttatggacaaacaactgccagtggatat
gatgaatataattctgataatgcagagttcttgtcgtcagaggttggagcccaacgattg
agctcaactggatatgcaggtcgcacttcttttactcttggtgctgaaaagctgcttcca
tctccagctgtgaggcttggcaaatcttcctctccttttagaattgaacatggcaggtcc
ttatcgcctccggttgatgaagttgtagtggataattctcccagaagggttgttgaaagg
cctgcctcatctcattttggatttggatatgggaatggcagaattacaggcagagaggag
ttgagtgaccggccgagaagtcacttgtctgatggttctcataggcgatctgaaactact
gctgcctataataatggacttgagcttcgaagaccaagagcattaattgatgcatatggg
aatgatcaaaggagagaaactcaaaactataatcctttgaaagttgatatcaatggcata
gaaaataagatgggtgcaaaaacatggcagaatactgaagagaaagagtttgattgggaa
gatatgagcccaactttagtagaccgcagtcagagtaaaaatccactttcatcattcatt
ccacctcttgaaagcttaaggacaagacctggccatgcaaaacacgacacagcaccccta
gattccgatttcaggagaagcaaccgatccagtcaagcacaaatttctgcggttaatgat
tcttccattattcatgaaaatgcagttcctattgtcagttcagtctgtggatcaagcagt
aagataacaggattgcatgatgacccttcacaatttcttggctctcgttatcctcaagaa
gcttttgcacactatattgctcactcttcacgacatcctctcagttccgaaggaggtggg
gcgaacttccaaatgcttccttcatcaagtgctaaccaaaaacctctaattaacagtttt
ccagatgctgatgcacaacttcaagggtcctctgctattgcatcgaggatgggtgctgaa
agtatcgactcatggaagtcagagtctctggcaacggctgtaccaccattagcaggggca
tggcctccaataaatatacaaaaaactcattcattccctgtgcttcctcctcttccacag
cagaaaaagagtaagagtcaatttgatcaaatgaatgctagcaatacagttatgaatcaa
ggtctaaacaagtcatttttgcctgagcatcagtttaatagtattgaaaacaaggcgctg
agctcgataaagctgccttcatttcccaatcagcaggccttagcggtccctgtaaatccg
cagaaccgagaacaagtcactcctacgcaaccaaaattgttgtctcaggaggttcgaaga
aatttggttccacctcctgccattcctgctgtggtttcgatgccatctctgttaccaccc
ttggctcatggatacataccgcaagggcgtaatactgctacaagtaatgtcatgtcgaac
ccaattcttggtttgcatccatctatgccattcctcaatactccaagcagctctatgcat
ttgcatggtgcaggttttccccctttacctcaagggcctcgtcctgattcatctcatatg
attcctatatcacacaattcaggttccattgccccgaaccctcaaggtgggggtgcactc
tcaggtttgattagttctcttgtggctcaaggtttgatctcattgacgaatcaatctctt
gtacaggagtctgtgggacttgagttcaaccctgatgttcttaaggtgcgccatgagtct
gcaataactgctttatatgctgatcttcctagacaatgcacaacatgcggacttcggttt
aaatgccaagaggagcacagtagtcatatggattggcatgtcaccaaaaaccggatttcc
aaaactcgtaagcaaaagccttctcgtaagtggtttgtaagtgtcaacatgtggcttact
ggcgcagaagcattgggaactgaggcagtccctgggttcttaacagctgagagtgatgtc
gaaaagaaggatgatgaagaatttgctgttcctgctgatgaagatcagaatgtctgtgca
ctttgtggagaaccttttgatgatttttatagcgatgaggctgaggaatggatgtatagg
ggagctgtctacatgaatgctcccagtgggtcggcagcgggcttggataggtctcaattg
ggtcccatagtgcatgctaaatgcaggtctgaatctagtgtggtttcccctgaagttttt
ggacaagatgaagggggatatacggaagagggtagtcaacagaaacggttgcggacttag
DBGET
integrated database retrieval system
