Actinidia eriantha (wild kiwifruit): 130784521
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Entry
130784521 CDS
T09464
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130784521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130784521
Enzymes [BR:
aew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130784521
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130784521
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130784521
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
130784521
NCBI-ProteinID:
XP_057500402
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All DBs
Position
9:4648568..4659873
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AA seq
592 aa
AA seq
DB search
MLNVLRVHLPSEIPIVGCELTPYVLLRRPDKSVTTEDVPESAPLDGHFLRYKWYRIQNDR
KVTICSVHPSEQATLQCLGCVKAKIPVAKSYHCSSKCFSDAWQHHRVLHERAASAVNENG
NEEEELFGRFNSTGSGGPSLSNGTAPVYPAAVTQRNGGETWFDVGHCKTYTPTADDIGHV
LKFECVLVDTETKLPVGHANTILTSRVIPAPSPSPRRLISVSGVDVLGHLDVEGRISSTG
TFTVLSYNILSDVYSTSELYSYCPSWALSWPYRRQNLLREIVGYHADIVCLQEVQSDHFE
EFLAPELDKHGYQALFKRKTAEVFSGNIRTIDGCATFFRRDRFAQVKKYEVEFNKAAQSL
TDAMLPSAQKKTALSRLVKDNVALIVVLEAKFSNQGIDNPGKRQLVCVANTHVNVHQDLK
DVKLWQVHTLLKGLEKIAVSTYIPMLVCGDFNAVPGSAPHALLAMGKVDPMHPELAVDPL
GILRPVSKLMHHLPLVSAYSPFARMGVSLGLEQHRRRMDPTTNEPLFTNCTRDFIGTLDY
IFYTADSLTVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCVPRTGR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctaaacgtgctgcgagtccaccttccgtccgaaattccgatcgtaggctgcgaactg
acgccgtacgtgctcctacgccgccccgacaagtcagttaccaccgaggatgtccctgaa
tcagcacctcttgatgggcactttttgagatacaagtggtaccgtatacaaaatgatagg
aaagttactatctgcagtgtacatccatccgagcaagctacattgcagtgtcttggatgt
gttaaggccaaaatacctgttgccaaaagttatcattgctcttctaaatgtttttcagat
gcgtggcagcatcatcgtgttctgcatgagcgtgctgcaagtgcggtaaatgaaaatgga
aatgaggaggaagaactgtttgggcgcttcaacagtacaggatctgggggccctagcttg
tccaatggtactgcacctgtatatccggcagcagttacacaaagaaatggtggcgaaaca
tggtttgatgttggacactgtaagacttatacaccaacagctgatgatattggtcatgtt
ctgaagtttgagtgtgttttggtggacacagaaacaaagctacctgtgggacatgccaac
accattttaacgtcccgtgtcattccagctccatcccctagcccccgacgcttgatctct
gttagtggagttgatgttttggggcatttggatgtagagggtcgtatttcatctacagga
acttttacggtgctctcgtacaacatattgtctgatgtgtattccacaagcgaattatat
agttattgcccttcgtgggctctctcatggccttatcgcaggcagaatttgttacgagaa
atagttggttatcatgctgacatcgtttgtcttcaagaggtacaaagtgaccactttgag
gaatttcttgcccctgaactagacaaacatggttatcaagctctatttaaaagaaaaaca
gccgaggttttcagtggaaatattcgtacaattgatggttgtgcaacattttttcgcaga
gacagatttgcacaagtcaaaaaatatgaggttgaatttaataaagctgcacagtctttg
actgacgcaatgcttcctagtgctcagaagaaaacggcacttagtcgattagtcaaggat
aatgttgcactgattgtggttcttgaagcaaaattcagtaaccagggaattgataatcct
gggaaacgccagcttgtttgtgtggcaaatacacatgtgaatgtccaccaggatttgaag
gatgtcaagctctggcaggtccatactctcttgaaaggattggaaaaaatagctgtcagt
acatacattcctatgttggtgtgtggggattttaatgccgtccctggaagtgcccctcat
gcacttcttgcgatgggaaaggttgatcctatgcatcctgaattggcagtagatcctctt
ggaatcttacgccctgtgagcaaacttatgcatcacctgccattggttagtgcctactca
ccatttgcaagaatgggggttagtcttggtttagagcaacatagaaggagaatggacccg
acgacaaatgaaccgttatttacaaactgcaccagagattttattggtactcttgattac
atattttatacagctgactctttaacggtggagtctttgttggagctcttggatgaggat
agcttgaggaaagacacggcacttccttctccagagtggtcttcagatcatatagcactc
ttggctgaatttcgctgcgtgcctagaactggacgctga
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