Actinidia eriantha (wild kiwifruit): 130788487
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Entry
130788487 CDS
T09464
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03013
Nucleocytoplasmic transport
aew03015
mRNA surveillance pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130788487
09122 Translation
03013 Nucleocytoplasmic transport
130788487
03015 mRNA surveillance pathway
130788487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130788487
03041 Spliceosome [BR:
aew03041
]
130788487
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130788487
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130788487
Spliceosome [BR:
aew03041
]
Complex C
Other components
EJC/TREX
130788487
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130788487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
130788487
NCBI-ProteinID:
XP_057505152
LinkDB
All DBs
Position
11:12372920..12385693
Genome browser
AA seq
428 aa
AA seq
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MDETKENDAYEEELLDYEEEDEKVTDSVNAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPGLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLEALDMRRDVQTIFKMTPHDKQVMMFSATLSKDIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKDGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaacgaaggagaacgacgcttacgaggaagagcttctcgactacgaggaagaa
gatgagaaggtcaccgactccgtcaacgccaaagtgaatggcgaatccgccaagaagggc
tatgtcggaattcacagttccggattcagagattttcttttgaaaccagagcttctgcga
gctattgtagactctggatttgagcatccttccgaagtgcaacatgaatgtattcctcaa
gcaatattgggcatggatgttctatgccaagcaaaatctgggatgggaaaaactgctgtt
tttgttctgtcgacgctgcagcaaattgagcctgtcgcaggtcaagttgctgctcttgtt
ctatgtcatacaagggaactagcttaccagatctgccatgagtttgagagattcagcact
tatttaccagggctcaaggttgctgttttttatggcggtgtcaatataaaaattcacaag
gatctactgaagaatgaatgccctcacattgttgttggaacacctggaagaatactggca
cttgctagagataaggatctttctctgaggaatgtgaggcattttatccttgatgaatgt
gacaaaatgctcgaggcacttgacatgaggagagatgtgcagacgatattcaagatgact
cctcatgataagcaagttatgatgttttcagcaacactcagcaaggatatccgtcctgtt
tgcaagaaatttatgcaagatcctatggaaatttatgtggatgacgaggccaagttgacc
cttcacggtcttgttcagcattacatcaaattgagtgagctggagaaaaatcgcaagttg
aatgaccttcttgatgcgttggacttcaatcaagttgttatatttgtcaagagtgtgaac
agagctgcggagctgaacaagttgctggtggagtgtaattttccatccatttgcattcat
tctggcatgtcccaggaagaaaggttgacacgctacaagggcttcaaggacggacacaag
aggatactcgtggcaacagatctggtcggtaggggaattgacattgagagagttaatatt
gtcattaactatgacatgccagattctgcagatacttatctgcacagggtgggtagagct
ggtaggtttggtaccaaaggactagcaattacatttgtttcatctgcgtcagattccgat
gttctcaatcaggttcaggagaggtttgaagtcgatataaaggagcttcctgagcagatt
gatacgtctacatatatgccatcctag
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