Actinidia eriantha (wild kiwifruit): 130789607
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Entry
130789607 CDS
T09464
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130789607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130789607
03012 Translation factors [BR:
aew03012
]
130789607
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130789607
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130789607
Translation factors [BR:
aew03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130789607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
FoP_duplication
T2SSE
BEX
NACHT
Motif
Other DBs
NCBI-GeneID:
130789607
NCBI-ProteinID:
XP_057506390
LinkDB
All DBs
Position
12:7485953..7505225
Genome browser
AA seq
1030 aa
AA seq
DB search
MSLRLVGTTPHCAFLYNPALSTSLLLLPYRLRIFTSAMSHRLNFQGGRRGGGRGGRLGGD
GGRRGGGRGGRGEQRWWDPVWRAERLRQQEAEMEVLDENEWWGKMEQLKRGGEQEMIIKR
NYSRDDQNILSDMAYQLGLYFHAYNKGKALAVSKVPLPDYRADLDDRHGSTQQEIRMSTE
IERRVGNLLGSSKGTDSVDNSPGTSSQSAKKLMSGVDSPKPDPVFEIDADKERLNVELKD
RQEKMKARDNVKAMQLFREKLPAFKMKSEFLKAVAANLVLVVSGETGCGKTTQLPQFILE
EEISSLRGANCNIICTQPRRISAISVAARISSERGESLGESVGYQIRLESKCSAQTRLLF
CTTGVLIRRLVQDPYLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATI
NADLFSNYFGNAPTIHIPGMTFPVAELFLEDVLEKSRYSIKSEFDNFQGSSRRRRRQQES
KKDPLTELFEDVDIDSEYKSYSTNTRQSLEAWSGSQLDLGLVESTVEYICRHEGDGAVLV
FLTGWDDISKLLDQVKANNFLRDPSKFLVLPVHGSMPTINQRAIFDRPPANIRKIVLATN
IAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCY
RLYPKLIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAIGSFLSKALQPPDPLSVQNAIE
LLKTIGALDDREELSPLGRHLCTLPLDPNIGKMLLMGSIFQCLDPALTIASALAHRDPFV
LPVNRKEDADEAKRSFAGDSCSDHIALLKAFEGWKDAKRYGKERAFCWENFLSPVTLQMM
EDMRNQFLGLLSDSGFVDKSRGANAYNQYSNDLEMVSAILCAGLYPNVVQCKRRGKRSAF
YTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNISDYALLMFGGNLIP
SKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLKRKIEEPGLDISAEGKGVVAAVV
ELLHSQDVRY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcgcctagtcggcaccacaccgcactgcgctttcctctacaaccctgctcta
tcaactagtctgcttcttcttccctatcgtcttcgcatattcacatcggccatgtctcac
cgcctcaacttccaaggcggccgtcgcggcggaggtcgcggcggacgtctcggaggagac
ggaggacgccgcggagggggacgcggcggtcgcggcgagcagcggtggtgggaccccgtc
tggcgcgccgagcgtctgaggcagcaagaagccgagatggaggtgttggatgagaatgag
tggtggggtaagatggagcagttgaagagaggtggagagcaggagatgataatcaagcgc
aattacagtcgggatgaccagaatattttgtctgacatggcttatcaattagggctttac
tttcatgcatataacaaaggaaaggcactcgctgtcagcaaagttccattgccggattac
cgtgcagatcttgatgaccgacatggatcaacacagcaagagatacggatgtctacagaa
attgagagaagagttgggaatctattgggtagctcaaaagggacagattctgtagacaat
tctccaggtacatcctctcagagtgcgaaaaaattaatgagtggtgtagatagcccaaaa
cctgaccctgtgttcgagattgatgctgacaaggagagacttaatgttgaactcaaagac
agacaagagaaaatgaaggcccgtgataatgtaaaggcaatgcagttgttcagagaaaag
ctgcctgcattcaaaatgaagtctgaatttttaaaagctgttgcagcaaatctggtatta
gtagtttctggagagacaggttgtggcaaaactacgcagctccctcaattcattctagag
gaggagatatcatctttgcgtggtgctaattgcaacataatatgcactcaacctcgtcgt
atatctgcaatatctgtcgcggccagaatatcctctgaaaggggagagagtcttggtgaa
agtgttggctaccagatccgtctggagtcaaaatgctcagctcagacacggttgctattt
tgtacgactggagtgttgattcggcggctggttcaggatccatatttaactggagtgagc
catttgttggtggatgaaatccatgaaagaggcatgaacgaggactttctcttgataatc
ttgcgtgaccttctccctcgtcgtccagatcttcgtcttgttctaatgagtgccaccatt
aatgctgatttgttctccaattactttgggaatgccccaactattcatatcccggggatg
acattcccagtggcagagttgtttctagaagacgtgttggaaaaaagtcgttatagtatc
aaatcagaatttgacaacttccaggggagttcgaggaggaggaggagacaacaagagtct
aagaaagatcctttaactgagttgtttgaggatgttgacattgattctgagtacaaaagc
tacagcacaaatacaaggcaatctctagaagcttggtctggttcacagcttgatttgggt
cttgtggaatcaacagtagaatatatttgtcgccatgaaggtgatggagctgtccttgta
ttcctcactggttgggatgatatttctaagcttcttgaccaagttaaagcaaataacttc
cttagagatccaagcaagtttcttgtacttcctgttcatggttcaatgcctaccatcaat
caacgtgcaatatttgatcgcccacctgctaatataagaaaaattgtgctagcaacaaac
atcgctgagagtagtataaccatagatgatgttgtatatgtcatagactgtggaaaggcg
aaggagactagttatgatgctttaaacaaactggcttgtctgctgccatcatggatttca
aaggcctcggcacatcagagacgtggtcgtgctggtcgtgtgcaacctggtgtttgttac
agattgtatccaaaattgatccatgatgcgatgctccaatatcaactgccagaaattctt
cgaacacctttgcaagagctatgtctgcatattaaaagtttgcagcttggtgccattgga
tcttttttatcaaaggcgcttcagcctccagatcccctctctgttcaaaatgccattgaa
cttcttaaaacaattggggctctagatgatagggaagagctctctccacttggacgccac
ctgtgcactctgcctttggacccaaatattggaaagatgcttctcatgggttcaatcttt
caatgccttgatcctgcattaacaattgcttctgctcttgcacaccgtgacccatttgtc
cttccagtaaataggaaagaggacgctgatgaggcaaaaaggtcctttgcgggtgattct
tgcagcgatcacattgcacttctcaaagcatttgaaggatggaaggatgcaaaacgttat
ggaaaagaaagagctttctgttgggaaaatttcttatctcccgtaacgttgcaaatgatg
gaggatatgagaaaccagtttttgggtctactgtccgacagcggctttgtagataaatcc
agaggtgctaatgcttataaccaatatagcaatgatttggagatggtatccgcaatcctc
tgtgctgggctctatcctaatgttgtgcagtgtaaaagaagaggaaagcgatcagctttt
tacactaaagaagttgggaaagttgacatccatcctgcatctgtaaatgctggggttcat
cttttccctcttccgtacatggtttatagtgaaaaagtgaagacaaccagcatatacata
agagattctacaaatatatcggactatgctctacttatgttcggtggtaatctcattcct
agtaagaccggagaaggcatcgaaatgcttggagggtaccttcatttctctgcttcaaag
agtgtgttggagttgatacggaaattgcgaggggagcttgataagcttctgaagagaaag
attgaggaaccggggctggacatctctgctgagggaaagggggtggttgcagctgtggtt
gagttacttcatagccaagatgtacggtattga
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