Actinidia eriantha (wild kiwifruit): 130791049
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Entry
130791049 CDS
T09464
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130791049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aew03041
]
130791049
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130791049
Spliceosome [BR:
aew03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130791049
Complex B
130791049
Complex C
U2 SnRNP specific factors
130791049
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
130791049
NCBI-ProteinID:
XP_057508129
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All DBs
Position
13:20348130..20353876
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AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRPITYNFERSQPAQRLYVPPSSRSGGHDNYEDSDVDNIDYDDRDGS
NDAADNGGDVGGGGDDEIDPLDAFMEGIQEDLKAAAPPKAEKKFEKYRDDEDDDPVESFL
RAKKDVGLTLASDALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPILLDKKKIEPIPALD
HNLIDYEAFNKDFYEEKPSISGMSEQDVVEYRKSLAIRVSGFDVPRPIKTFGDSGFSVEL
AKAIAKQAYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHVMDQPELAKE
EGPIGVICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVVATP
GRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRQDRQTLLFSATMPRK
VEKLAREILTDPIRVTVGEVGMANEDITQVVQVIPSDAEKMPWLIERVPALIDNGDVLVF
SSKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGMYHVLIATDVAARGLDI
KSIKSVVNFDIARDIDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNGLIAAGQN
VSAELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGSRGVRGVDFGLGIGYNADSNNTSSS
TVPSRSATVSSPRTGMMPQFKSNFVAASSNSQNQSINNSSGSYANKRMVLPGFVSGGSIG
GDVNAAWTTNSPNPAPASGGNPTNQNPRGNASQKNSESSRDRPRERRRPSGWDQ
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaggaagttcggattcgaaggcttcggcatcaatcgcccgattacttacaac
ttcgagcgctcgcaacctgcacagcgactctacgtcccgccttcgtcgcgctccggcggc
cacgacaactacgaagactcggacgttgataacatcgactacgacgaccgagatggttcg
aacgacgccgccgacaacggcggggatgtcggcggcgggggagatgacgaaatcgaccct
ctcgatgcgttcatggaagggattcaggaggatttgaaggcggctgcgcctccgaaggcg
gagaagaagttcgagaagtacagggacgacgaggatgatgatccggtggagagtttcttg
agggcgaagaaggatgtagggttgactctggcttcggatgctcttcacgctgggtatgat
tcggatgaggaggtttatgctgcggcaaaggcggtggatgccggaatggttgagtacgat
tcggatgataatccgattttgctcgacaagaagaagattgagccgattccggctttggat
cataatttgatagattatgaggccttcaacaaggatttctacgaggaaaaaccatccata
tcaggtatgagtgagcaggatgttgttgaatacaggaagagccttgctattcgtgtttct
ggttttgatgttccaaggccaattaagacattcggagactctggattttctgtggagtta
gcaaaagctattgcaaaacaagcatatgaaaagcctacacctatacaatgccaagcttta
cccattgtgctgtctgggagagacatcattggtattgcaaaaactggttcgggaaaaact
gctgcatttgtgcttcctatgattgtccatgttatggatcagcctgaacttgcgaaagag
gagggtcctattggagtgatctgtgcacctactagagaattagcacatcaaatatatttg
gaggcaaagaaatttgcaaaatcacatggtattcgtgtctctgcagtctatggtggaatg
tccaagcttgatcagttcaaagagcttaaggcaggatgtgagatagttgttgctactcct
ggaaggttgatagacatgctaaaaatgaaggcattgacaatgctcagagcaacttatctt
gtacttgacgaggccgaccggatgtttgaccttggttttgagccacaaataaggtctata
gttggtcagattaggcaagatcgtcaaaccttactattttcagcgacaatgccccgcaaa
gttgaaaagttagccagggaaattctcactgatcctataagagtgactgtgggagaggtg
ggaatggccaatgaggatattactcaagttgttcaagtaattccttctgatgctgagaag
atgccttggcttattgaaagagtacctgcactcattgataatggtgatgttctagttttt
tcttcaaaaaaagccacagtggatgagattgaatcacaactggctcaaagggggttcaaa
gtcgcagctcttcacggtgacaaagaccaggcttctcggatggacatattgcaaaaattt
aagagtggaatgtaccacgttctaattgcaactgatgttgctgctcgtggtcttgacatt
aagtcaattaagtcagtggtcaactttgatatagctagagatatagatatgcatgtccat
cgaattggaagaactggccgtgctggtgacaaagatgggactgcatacactcttatcact
cagaaagaggcaaggtttgcaggtgaattggttaacggtttgatagctgctggtcagaat
gtgtccgcagaattgatggatcttgctatgaaggatgggagattcagatccaagcgtgat
gcaagaaaaggaggtggtaaaagggctaaaggaaggggaggtggcagtcgaggcgtgcgc
ggtgtggattttggtttgggtattggatataatgcagactccaataatacttcatcgagc
actgtccccagtcgttctgctactgttagttcaccaagaactggaatgatgccacagttt
aaaagcaacttcgtagcagcttcatctaattctcagaatcagagcataaataacagttca
ggcagctatgccaacaagagaatggtgttacctggttttgtttctggtggttcaataggt
ggtgatgtaaatgctgcttggacaaccaattcaccgaatcctgcgcctgcatcaggagga
aaccccactaatcagaatcctaggggaaatgcaagtcagaagaactcggaaagttctaga
gatagaccaagagaaaggcgtagaccctctggctgggaccagtaa
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