Actinidia eriantha (wild kiwifruit): 130791778
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Entry
130791778 CDS
T09464
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03022
Basal transcription factors
aew03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130791778
09124 Replication and repair
03420 Nucleotide excision repair
130791778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aew03021
]
130791778
03400 DNA repair and recombination proteins [BR:
aew03400
]
130791778
Transcription machinery [BR:
aew03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130791778
DNA repair and recombination proteins [BR:
aew03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130791778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
I_LWEQ
Motif
Other DBs
NCBI-GeneID:
130791778
NCBI-ProteinID:
XP_057509083
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Position
13:complement(13469541..13492358)
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AA seq
601 aa
AA seq
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MVNGKVIKRANYKSSVKDPGIPGILDMTKDRFTFTPNNPRSSPSLTVQFKLIKGHKFTKE
GSHKQALLNLTHDQGGSYIFEFENFSDRDVCKELVGRATTVAGEAGKSGSERSAVTTQDE
QLSTKEMERRIKLLQEDSELQKLHKQFVIGGVLTEAEFWATRKKLLDGDANRVIKQRVGF
KSAMLADVKPSADGRSNRVTFNLTPEIIHQIFAEKPAVHQAFLKFVPIKMSEKDFWTKYC
RAEYLHSTKNAVAAAAEAAEDEELAVFLKQDDVWASEARHKIRRVDPTVDMDADEGDDYI
HLLDHGMSRDFNEEATDLQYEEYRRTLSQVLNRHGAVVLEGRCIDVELGDTRSVAEALAR
SKQVELANEASDGNANQERLDRLSLMAEIEDLQTSRDLSLAPLFIKDPRDYFDSQQANAL
KTLGDTLAGTRQMKCRLSAGEAYGSLRECICEVKAAGLSDPIVTPEAAYKVFTGLTQSIS
STKYHIGKNPQESVLDRLPSITKEELLHHWTSIQELLKHFWSSYPITTSYLYVKVRKLRD
AMSQIYSKLQEIKESVQSDFRHQASLLVQPMLQALEAAFAHYDADMQKRSAKSGDKPNGF
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgggaaagtcatcaagcgtgccaactacaagtcctcagtcaaggaccctggc
atacctggcatattggacatgacaaaggaccggttcaccttcacacctaacaacccaaga
tcttcaccaagccttactgtgcagtttaaattgattaaagggcacaagttcaccaaggag
ggatcacataagcaagccctacttaatctaacccatgatcagggtggaagttacattttt
gagtttgaaaacttttcggatcgtgatgtttgcaaagaacttgtaggcagagctactaca
gtggctggagaagctggaaaatctggttctgaacgatctgctgttacaactcaagacgaa
caacttagtacaaaagaaatggagcgtcggattaagctgctgcaagaagatagcgagttg
cagaaactccataagcaatttgtgataggaggtgttttgacggaagctgaattttgggca
acaaggaagaagctgctggatggggatgccaacagggtgataaaacagcgggtgggattc
aaaagtgccatgcttgcagatgtcaaaccatctgctgatggtcggtcaaatcgagttaca
tttaacttgacaccagagattattcatcagatttttgccgagaaaccagctgttcaccag
gcattcctgaaatttgttcccattaagatgtcagaaaaggacttctggaccaaatattgc
agagcagaatacctccatagtacaaaaaatgctgttgctgctgccgcagaggctgctgaa
gatgaggagctcgctgttttcttgaagcaagatgacgtgtgggcaagtgaagctcgacac
aagattagacgtgttgatccaacagtagacatggacgctgatgaaggggatgattacatt
catcttctggatcacgggatgtctcgtgatttcaacgaggaggctactgacttgcagtat
gaagaatacagaaggactctttcacaagtacttaatcggcatggagcagttgttcttgaa
ggaagatgtatagatgtggagttgggagatacaaggtccgtagctgaagcgcttgctagg
tcaaaacaggttgagttggccaatgaagcatctgacgggaatgcaaaccaggaacgcttg
gataggctttctctgatggctgagattgaagatcttcagacatctcgtgacctttcattg
gcaccacttttcattaaggatcctcgagactactttgattctcaacaagctaatgcacta
aaaactttaggggatacactagctggaacgagacaaatgaaatgcaggctgagcgctggt
gaagcttatggttcgctaagagagtgtatatgtgaggttaaagctgctggactcagtgac
cccatagttacacctgaagctgcttataaggttttcaccggattgacccagagtatttca
agcaccaagtatcatattgggaagaatccgcaggagagtgttttggataggttgccaagc
atcactaaagaggaactcttacatcattggacatccattcaggaattactcaagcatttc
tggtcatcatatccaattacaacatcatatctttatgttaaggtacgcaaactgagggat
gccatgtcacaaatttattcaaaattgcaggagatcaaggaatccgtgcagtcagatttt
cggcatcaagcttctctccttgttcaacctatgcttcaggctttggaagctgcgtttgca
cattatgacgcagacatgcaaaagagatcagcaaagagtggcgataaacccaatggattt
gtgtga
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