Actinidia eriantha (wild kiwifruit): 130792368
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Entry
130792368 CDS
T09464
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130792368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aew03400
]
130792368
DNA repair and recombination proteins [BR:
aew03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130792368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
Prothymosin
Motif
Other DBs
NCBI-GeneID:
130792368
NCBI-ProteinID:
XP_057509911
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Position
13:complement(20264160..20274827)
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AA seq
1299 aa
AA seq
DB search
MASSRPLSNGRSPLVNQQKQITSFFTKSSSSPSPSSLPSKQTPKSQPKPIPKLSPSPITP
SPLQSKHKKPLIVIGSSPISHSTLATTKKSHGQEAVNRRVRVYWPLDQSWYEGCVKSFDK
ISGKHLVQYDDAEEEFLDLSKEKIELVEEEVKRRFRRLRCVSVIEDEGEEFAANAESGGD
DDDSADEDWGKNGETEEAEDGKEGTDLEEEDDDDEDQGGCVKRKQGKDSESRKRKITGGN
SGYSKKRKSDGEDPKKSILKVSLDGNGGKVVEPKVNGIGKTAHAVDDGLVGDAAERFGTR
ERQKLHFLGDNRRDANRRRPGDLNYDPRTLYLPPDFLKSLSGGQRQWWEFKAKHMDKVIF
FKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLAVEQT
ETPEQLEIRRKEKGSKDKVVKREICAVVTKGTLTGGEMMSANPEASYMLAVTESCQTLEH
EQGRIFGICVVDAATSKVILGQFQDDSECSALCCLLSELRPVEIIKPAKLLSPETERVLL
THTRCPLVNELVPLSEFWDAERTVSEVKAVYRRFHEQSISLTTNEANLLANGPSSKDTFS
SLPDVLLELVNAGNDGSYALSALGGTLFYLKQAFLDETLLRFAKFESLPCAGFSDIGQKP
YMILDASALENLEIFENSRNGDSSGTLYAQLDHCVTAFGKRLLKSWLARPLYHLDSIRER
QDAVGDVRGVNLPFALEFRKDLSRLPDMERLLARIFASSEGNGRNANKVVLYEDEAKKQL
QEFISALRGCELMTQACSELGVILENVESRLLHHLLTPGKSLSDVHSVLKHFKDAFDWVE
ANNSGRIIPHDGVDTAYDSACRAVMEVESGLKKHLKEQRKLLGDASINYVTIGKDAYLLE
VPESLSGSVPQNYELRSSKKGFFRYWTPNIKKLVGELSQAESEKESKLKSILQRLVGRFS
EHHNKWRQLVSTVAELDVLISLAIASDYYEGPTCRPIISGLPCPDEVPFLRAKSLGHPVL
RSDSLGRNTFVPNDVTIGSSGHANFILLTGPNMGGKSTLLRQICLATILAQVGADVPAES
FEMSPVDRIFVRMGAKDHIMAGQSTFLTELLETASMLSSATHNSLVALDELGRGTSTSDG
QAIAESVLEHFVHNVQCRGMFSTHYHRLAVDNQHNPKVSLSHMACKVGKGVGDLEEVTFL
YRLTPGACPKSYGVNVARLAGLPDTVLHKATAKSREFEGMYGKHRKLPIQSAEDKMRGLI
RHLIEIATNLNFHETADERIGVSSLSELQNRARMLLKQN
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttcacgtcccctgagcaacggccgatcaccgttggtgaatcaacaaaagcaa
atcacatctttctttaccaaatcctcttcttctccttccccatcaagtcttccctccaaa
caaacccctaaatcccaacctaaacccatccccaaactgagccctagtccaatcacccct
tcacctcttcaatccaaacacaaaaagccccttatagtcatcggctcatctccgatttcc
cattcaaccctggccaccaccaagaaatcgcacggccaggaggcggtgaacaggagggtt
agggtttattggccgctcgaccaatcttggtacgaaggttgcgtcaaatctttcgataaa
atctcaggcaagcatctcgttcagtacgacgatgccgaagaggagtttttggatctttca
aaggaaaagatcgagttggtcgaggaagaagtgaaaagaaggttccggaggctgcgttgt
gtttcggtgattgaagatgaaggagaagaatttgcggcgaatgcggagagcggtggtgat
gatgatgattcggcggatgaagattgggggaagaatggggaaacggaagaagctgaagat
ggtaaggagggtacggatttagaggaggaagacgatgacgacgaggatcaagggggatgt
gtgaaacgaaagcaggggaaggattcggaatcaagaaagcgaaagataactggagggaat
tcaggttatagtaagaagaggaagagtgatggagaagatcccaagaagagcatacttaag
gtttctttagatggcaatggaggcaaagtggtggagcccaaagttaatggcattggaaaa
acagctcatgccgtggatgatggtttagtgggtgatgcagcagaaaggtttggaacgcgt
gaaagacagaagttgcacttccttggggacaaccgtagggatgccaatagaagacgtcct
ggagatttaaattatgatccaaggactctctatttgcctcctgattttttgaagagctta
agtggtggccagagacaatggtgggagttcaaggcaaagcatatggataaggttatattt
ttcaagatgggcaagttttatgagcttttcgaaatggatgcacatgtaggagtgaaagaa
ctcgatttgcaatatatgaagggagaacagcctcattgtggatttccagaaaagaatttc
tcaatgaatgtagagaagttggcacggaagggttatcgagttcttgctgtggagcagacg
gagacgcctgaacagcttgagattcgtcgcaaggaaaagggttctaaagacaaggttgtg
aagcgagaaatatgtgctgtggtcacaaaagggacgttaactgggggagagatgatgtca
gcaaaccccgaggcttcttacatgttggcagtgactgaaagctgtcaaacattagagcat
gaacaggggcgaatctttggtatctgtgtggttgatgctgctacaagcaaggtcattctt
ggtcagtttcaggatgattcagagtgcagtgccttgtgttgtctgctatctgaattgagg
ccggtggaaattataaaacccgccaaactgcttagccctgaaactgagagagttctgctt
acacatacaagatgtcctttagttaatgagttggttccactttcagaattctgggatgct
gagagaactgttagtgaagtcaaggctgtctacaggcgttttcatgagcaatcaatatct
ttgactacaaatgaagcaaatttgcttgctaatgggccctcttcaaaagataccttcagc
tccctaccagatgtattattggaacttgtgaatgcaggcaatgatggcagctatgcactt
tcagctcttggaggcactcttttctacctgaagcaagcttttctggatgaaactttgctc
agatttgcaaagtttgagtcactaccatgcgctgggttcagtgatattggtcaaaagcca
tacatgatacttgatgcatctgcactggagaaccttgagatatttgagaatagtagaaac
ggagactcttcgggaacactatatgcgcaattggaccattgtgtgacagcatttggaaag
aggttactcaaatcatggcttgcacgacctttgtaccatctggattcaattagagaacgg
caggacgctgttggagacgtcaggggggttaacctacctttcgcacttgaatttcggaaa
gacttgtccaggcttccagacatggagcggttgctggctcgtatctttgctagcagtgaa
ggtaatggaaggaatgcaaataaagtagttctatacgaggatgaggcaaagaaacaactt
caagagttcatatcggctttacgtggttgtgaattaatgacccaagcgtgctctgaactt
ggtgtcatcttggaaaatgttgaatctaggctcttacatcatttgttaactcctggtaaa
agcctttctgatgttcattcagttctaaagcatttcaaggatgcctttgattgggtggaa
gcgaataattcaggtcgtataatacctcatgatggggttgatacagcgtatgattctgca
tgcagagctgttatggaggtggagtctggtttgaaaaaacacttgaaggaacagcgaaag
ttacttggagatgcatcgataaattacgtaaccattggaaaggatgcataccttctggaa
gtccctgaaagtttgagtggaagtgttccccaaaattacgagttacgatcatccaaaaag
ggcttctttcgttactggactccaaatatcaagaagctggtaggagagctctcgcaagct
gaatctgagaaggagtccaagttaaaaagcattttacagaggttggttgggcgcttcagt
gagcatcataataaatggagacaactagtttctacagttgctgaactggatgttttaatt
agcttagcaattgcaagtgactattatgaaggacccacatgccggcccattatctcaggg
ttgccgtgtccagatgaagtacctttcctccgtgctaaaagtttgggccatcctgttctt
agaagtgattctctgggtaggaacacatttgtccctaatgatgttactattggtagttct
ggtcatgcaaacttcatcctgctcactggtcctaatatgggtgggaagtccactcttctg
cgccaaatttgcttggctacaatattggcccaggtaggagcagatgtccccgcagaaagc
tttgaaatgtcacctgttgacagaatctttgttaggatgggagcaaaagatcatattatg
gcaggccaaagcacatttctgacagagcttttagagactgcatctatgctctcatcggcg
acccacaattcacttgtggcattggatgaacttggacgtgggacatcaacttcagatggg
caagctatcgcggaatcagtacttgaacatttcgtccacaacgtgcagtgtcgaggaatg
ttttctactcattatcatcgattagctgttgacaatcagcacaaccccaaagtctcactt
tctcatatggcatgcaaagttggaaaaggagttggagatctggaggaagttacctttctt
tacaggttgacccctggtgcgtgccctaaaagctatggtgtcaatgttgcacggttggct
ggacttcccgacactgtacttcacaaagctactgcgaagtctcgagagtttgaaggaatg
tatggcaagcacaggaagttgcctattcaaagtgcggaagacaaaatgagaggtcttatc
cgacatttaattgaaatagcgacaaatttgaatttccatgagactgctgatgagagaata
ggtgtcagctcactgtccgaactgcagaatagagcaaggatgcttctgaagcaaaactag
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