Actinidia eriantha (wild kiwifruit): 130792720
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Entry
130792720 CDS
T09464
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03013
Nucleocytoplasmic transport
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130792720
03015 mRNA surveillance pathway
130792720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130792720
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130792720
5.6.2.5 RNA 5'-3' helicase
130792720
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130792720
mRNA cycle factors
Common to processing body (P body) and stress granule
130792720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
nSTAND3
NPHP3_N
SRP54
ATPase
PhoH
AAA_16
Ribosomal_S13_N
AAA_22
AAA_32
AAA_25
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
130792720
NCBI-ProteinID:
XP_057510253
LinkDB
All DBs
Position
14:complement(9166612..9200945)
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AA seq
1242 aa
AA seq
DB search
MDSQGSNLFETASQPDTGNDAYTFLEFNTHSDDFDYPEFQELSQPIRSSAAWPTPSDSVP
DAADRASSADASRVSAAKGRGSGGGSGGSNQAAVVDALAAGMSGLNFEETGDDEGYEFSK
RDFAEHACRYCGVTNPPCVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKD
SPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCREPCLSVNALKDMNWDLSQWCPLI
DDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQPVV
LKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKGNLTIRWDIGLNKKRIAYFVFPKEDNE
LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFV
WKSTSFDRMQGAMKTFSVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAAGLPELNAS
QIFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI
SATGLKVIRISAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDE
KKYKALKQATEREISQSANVICCTCVGAGDPRLASFRFRQVLIDESTQATEPECLIPLVL
GAKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFP
SNSFYEGMLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEASN
VEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGR
EKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQQLWNGLLTHY
KEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPDTVGAVPSSSPNSDRRN
SRPRGSYMPSGPPNGTHKPGVHPTGYPMPRVPLPPYHGAPPSQPYAIPTRGFGAGWVSAG
TPIGSHLPHQQGSQQPIGNLGSTFSFPPLENLNSQPSVGGPLSQPGFVSNMTVQGRNQTF
QDGFSTGGMSQDFLSDDFKSQGSHVPYNVTDFSSQASQGGYAVDYVTQGAQDWFPGSFVN
HNSQAGYSRFGAGNDFMSQDYMAHGSQGLFTQVVFNDPSQDDASQSHFGMANANPLHSQD
LINPLYSQPFAHYNTQPLNLQATQQQPQQGQNSQNQKLHYNG
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaggggagcaacctctttgaaacggcgtcgcagccggacaccggcaacgac
gcctacaccttcctcgaattcaacactcacagcgacgatttcgattaccccgaatttcag
gagctttcgcagccaattcgttcctcggcggcgtggcccactccctccgattccgtgccg
gacgcagcggatcgtgcctcctcggccgacgcttcccgtgtatcggccgcgaaggggagg
ggaagtggcggcggcagtggtgggagcaatcaggcggcggtggtggatgctcttgcggcg
gggatgagcggtttgaacttcgaagagactggggatgatgagggttacgagttcagtaag
agggattttgcggagcatgcgtgtaggtactgtggggtgacgaacccgccgtgcgtggtg
aggtgcaatgtgccgtcgtgtcgcaagtggttctgcaattcgcgtgggaatacttctggg
tctcatatagttaaccatctggtccgggctaagcacaaagaagtttgtcttcataaagat
agtcccttgggagaaacaatccttgaatgttacaattgtggatgccgaaatgtgttcctt
cttggatttatctctgctaagactgacagtgttgtagttcttctttgcagggagccttgt
ctcagtgtcaatgcattgaaggacatgaattgggacctgagtcagtggtgtccccttatt
gatgatagatgttttctgcagtggcttgttaaggttccatctgaacaggagcagttgagg
gcacgccaaatcagtgctcaacaaataaataaggttgaagaactttggaagaccaatcct
gatgctaccttggaagatcttgaaaagcctggtgtggatgatgaacctcagcccgtggtc
ttgaagtatgaagacgcttatcagtatcaaaatgtgttcgcaccacttatcaagcttgaa
gctgactatgataaaatgatgaaagagtctcaaagcaaaggcaatctcacgatacggtgg
gatattggcctcaacaaaaagcgcattgcatattttgtgtttccaaaggaagataatgag
ttgcgtcttgtacctggtgatgaattgcggctacgctattcaggagatgctgctcatcca
gcttggcaatcagtagggcatgtgataaaattaactgcacaagaggaggttgctcttgag
cttcgtgctagtcagggagttcctgttgatgtgaaccatggttttagtgttgattttgta
tggaagagcacaagttttgatcggatgcagggagcaatgaaaactttttccgttgatgag
acaagtgttagtggatacatttatcaccacttgttgggacatgaggttgaggttcaaatg
gtccgcaatacattacctcgccgttttggtgccgctggcctgccagagcttaatgcatct
caaatttttgctgtgaaaagtgttcttcaaaaacccgtaagtttaattcaaggtccacct
ggcacgggaaaaactgttacttctgcagcaattgtgtatcatatggccaagcaaggccag
gggcaggttttggtttgtgctcctagtaatgtggctgttgatcaactagctgaaaagatc
agtgccacggggttgaaggtcatcaggatctctgcaaaatcaagggaagccgtaagttct
cctgttgagcatttaacccttcactaccaggttcggcatcttgacacatctgaaaagagt
gaacttcacaagttacagcaactaaaagatgaacaaggagaattatccagcagtgatgaa
aaaaaatataaagctctcaagcaagctacggagagagagatatctcagagcgccaatgtc
atttgttgtacatgtgttggtgctggtgatcctcgacttgctagttttagatttcgccag
gtcctcattgatgagtctactcaagcgacagagcctgagtgtcttattcccttagttctt
ggagccaagcaggttattctggttggtgaccattgccagcttggcccggtcataatgtgc
aagaaagcagctcgtgctggcctagcccagtctctatttgaacgcctagtgctacttggt
gtgaaaccaatcaggttgcaggttcaataccgcatgcatccatctctttcagaattccct
tccaacagtttttatgaaggtatgcttcaaaatggagtgacaatcaatgaaaggcaatca
ccaggcattgattttccttggcctgtgccaaatcgtccaatgttcttttatgttcagatg
ggacaagaggagataagtgctagtggaacatcctatctgaaccggactgaggcttcgaat
gttgagaaaattgtgactaccttcttaaagagtggtgtagttcctagtcagattggggtt
attacaccatacgagggacaacgagcatatattgtgaattacatgtcaagaaatggtgct
ctcagacagcaactttacaaggaaattgaggttgcaagtgtagattcattccaaggaagg
gagaaagactacattattttgtcttgtgtgaggagtaacgaacatcagggcattggattc
cttaatgatccacggaggcttaatgtagcactcacccgtgcgcgttatggtattgtcatc
ttggggaaccctaaagttctaagcaaacagcaactctggaatggtttattgacacactac
aaggagcacgagtgcttggtggaggggcctttgaataacttaaaacaaagtatggttcag
tttcaaaagcctaagaagatctacaatgaccgcagacttttctttggtggtggacctgga
attgtgcccgataccgttggggctgttccctcatcaagtccaaattccgataggagaaac
agtcgtcctaggggttcttatatgccatctggcccacccaatggtacccataagcctggg
gtacatcctactggttacccgatgcctcgagttcctcttccaccgtatcatggtgcccct
ccttcgcaaccatatgctattccaactcggggttttggggctggatgggtcagtgctggt
actcctattggcagtcatcttccgcaccagcaaggctcccagcaacctattggaaatctt
ggatctactttcagtttcccccctttggagaatctgaacagccagccatctgttggtgga
ccgttgtctcaacctggatttgtttctaatatgactgttcaaggacgaaaccagacattt
caggatggtttctctacagggggcatgtctcaggatttcctgagtgatgatttcaaaagt
caaggatctcatgttccatataatgttaccgacttctcttctcaggcttctcagggtgga
tatgctgttgattatgtgacacaaggagcgcaagattggtttccaggaagctttgtaaac
cataattctcaggctggatattcccgttttggtgcaggaaacgatttcatgtctcaggat
tacatggctcatgggtcccagggtctgttcacacaagttgtattcaatgatccatcacaa
gatgatgcctcccaaagccacttcggcatggccaatgctaacccccttcattctcaggat
ttgataaaccctctatattcccagccatttgcgcactataatacacagccgttaaacttg
caagctacacagcagcagccacagcagggccagaattcccaaaaccagaaacttcactac
aacggttga
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