Actinidia eriantha (wild kiwifruit): 130794005
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Entry
130794005 CDS
T09464
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03013
Nucleocytoplasmic transport
aew03015
mRNA surveillance pathway
aew03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130794005
09122 Translation
03013 Nucleocytoplasmic transport
130794005
03015 mRNA surveillance pathway
130794005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130794005
03041 Spliceosome [BR:
aew03041
]
130794005
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130794005
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130794005
Spliceosome [BR:
aew03041
]
Complex C
Other components
EJC/TREX
130794005
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130794005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130794005
NCBI-ProteinID:
XP_057511877
LinkDB
All DBs
Position
14:complement(1527270..1535955)
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKDNDAYEEELLDYEEEEDKVPDSVATKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILAATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaaccaaggacaacgacgcttacgaagaagagcttctggactacgaggaagag
gaagacaaagtccccgactccgtcgccaccaaagtcaacggcgaatccgccaagaagggc
tatgttggaattcatagttctggatttagagattttcttttgaagccagagcttttacgg
gctattgtggactctggatttgagcatccttctgaagtgcaacacgaatgtatccctcaa
gcaatattgggtatggatgtcatctgccaagcaaaatctgggatggggaaaactgccgtt
tttgttctgtcaacgttgcagcaaattgagcctgttgcgggccaagttgctgcccttgtt
ctatgtcatacaagggaattagcttaccagatctgccatgagtttgagaggttcagcact
tatttgcctgatatcaaggttgctgttttctatggtggtgtcaatatcaaaattcacaag
gatctactaaagaatgaatgcccccacattgttgttggaacacctggaagaatacttgga
cttgctagagataaggatctttctctgaggaatgtgaggcattttatccttgatgaatgt
gataagatgcttgagtcacttgatatgaggagagatgtgcaggaaatattcaagatgact
cctcatgataaacaagttatgatgttttcggcaacgctcagcaaggaaatccgcccggtt
tgcaagaaatttatgcaagatccgatggaaatctatgttgatgacgaggctaaattgacc
cttcatggtcttgtacagcactacatcaaattgagtgagatggagaaaaaccggaagctg
aatgaccttcttgatgcattggacttcaatcaagttgttatattcgtcaaaagtgtgagc
agagctgctgagctaaacaaattgcttgtggagtgtaattttccatccatttgcatccat
tctggcatgtcccaggaagaaaggttgactcggtataaaggattcaaggaggggcacaag
aggatactcgcggcgacagatctggttggtaggggaattgacattgaacgtgttaacatt
gtcatcaactatgacatgccagattcagcagatacttatctacacagggtgggtagagct
ggtagatttggtaccaaagggcttgcaatcacttttgtttcatctgcgtcagattctgat
gttctcaatcaagttcaagagaggtttgaggtggatataaaggagcttcccgagcagatt
gatacatctacatatatgccatcatag
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