Actinidia eriantha (wild kiwifruit): 130794460
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Entry
130794460 CDS
T09464
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130794460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130794460
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130794460
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130794460
mRNA degradation factors
3'-5' decay
Ski complex
130794460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
AAA_22
DUF3146
Motif
Other DBs
NCBI-GeneID:
130794460
NCBI-ProteinID:
XP_057512361
LinkDB
All DBs
Position
15:complement(1737940..1778786)
Genome browser
AA seq
1356 aa
AA seq
DB search
MDRITATNELAFRVGFSGHSGHLRIEPLPPVERPNPLNSLPDFIPPPAFAEETPESIKEY
IEEKYLLPRLDPDEFSLEKAGRQWDFDWFNKAKIHLEPSLPRSVIVPAWELPFRRPKKGV
ENGRWEPMSVQVEVSELAVEAEDSGGLPRIAGPANDFVKGSINNRPFRPGGLDGSQASDR
ILPVGASDGEWVWEVINGGRPQAIPPSFKEGMDLGDLKARSYSWNVYKDQTAVKSTSVKK
LNDLSVQFDDLFKKAWEEDDAEFVRDGHTSVPEAEVNEEFVKLESVELEAEVDKENVTFG
VFDTESSMLDEILSVESGGSTTRLHGSSDCDGQQHKEDWALCGGGERIAEHFHELVPDMA
LEFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYALALASKHCTRAVYTAPIKT
ISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV
HYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPV
PLEHCLFYSGELYKICESEAFMAQGLKAAKDTYKRKSSSTVGGGTGTYPGFAAGHEGSRA
QKRENSFRGKQNKHSGSHYLGNFSGMGGGNQNNGSNRVPWRSEASLWLLLINNLLKKSLL
PVIIFCFSKNRCDKSADNMTGVDLTSSSEKSEIRVFCDRAFSRLKGSDRNLPQVVRVQSL
LRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGK
EFRQLLPGEYTQMAGRAGRRGIDKIGTVVIMCRDEIPEESDLTHVIVGSATRLESQFRLT
YIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQSTITIECIKGEPTIE
EYYEMYSEAENYSNQISEAIMQSSSHQTFLSPGRVVVVKSKSAQDHLLGVIVKAPSVNAK
RYVALVLTPNLPSTLQAPLTSGSRQDETADFQILVPKAKRGLDDDYYSSASSRKGSGVIN
IKLPHRGSAAGINYEVREIDSGEILSMCNCKMKIDIVGLLEDNKAAAYSKTVQQLLNLKS
DGKYPPALDPVKDLKMKDMNLVEDYYKWNNLLQKMAQNKCHGCVRVEEHIKLAKGIKEHK
DEVNVLKFQMSDEALQQMPDFQGRIDVLKEIGCVDSDLVVQIKGRVACEMNSGEELICTE
CLFDNQLDDLEPEEAVAIMSALVFQQKNTSKPSFTSKLSQAKQRLYETALRLGELQAHFK
LQINPEEYAQNNLKFGLVEVVYEWAKGTPFADICGLTNVPEGLIVRTIVRLDETCREFKN
AASIMGNSALYKKMESASNAIKRDIVFAASLYITGV
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatcaccgcaacgaacgagctcgccttccgggtcgggttctccggccacagt
ggccacctcagaatcgaacccctcccgccggtcgaacgccccaatcctcttaactctctg
cccgacttcataccaccacctgcatttgctgaagaaacaccggaatcaataaaagaatat
atagaggagaagtatctcttgccaagattggatcccgatgagttttctctggaaaaagct
ggtaggcagtgggactttgactggttcaataaagcaaaaattcatctggagccatcgttg
cctcgatctgttatagttcccgcatgggaattaccttttagacgcccaaagaagggggtg
gagaatggaagatgggaaccaatgtcagtgcaggtggaggtgtcagaacttgcggtagaa
gctgaagattctggtggtttgccacgcatagctggacctgcaaatgattttgttaagggc
agcatcaataaccgtccttttcgtccaggtggtttggatggttcgcaagcttcagatagg
attcttcctgttggtgcctctgatggtgaatgggtttgggaggtgattaatggtggtcgt
cctcaagccattcctcccagctttaaagaaggaatggatcttggtgatcttaaagcacgt
tcatactcgtggaatgtttataaggatcaaactgcagtcaagagcacatctgtcaaaaaa
ctgaatgacttgtctgtgcaatttgatgacttatttaagaaagcttgggaagaggatgat
gcagaatttgtgagagatggtcatacgtcggtaccagaagctgaagtcaatgaggagttt
gttaaattggagtctgttgagttggaagctgaagtggacaaggaaaatgtgacttttggt
gtttttgatactgaatcatcgatgttggatgagattttgtcagttgaatcaggaggatca
actacaagattgcatggaagtagcgattgtgatgggcagcagcataaagaggactgggct
ctgtgtggaggcggtgaaagaattgcagaacattttcatgaacttgttcctgacatggca
cttgaatttccttttgaactggataaattccaaaaggaggctatctattatcttgaaaag
ggggaatctgtttttgtggcagctcacacatcagctgggaagacagttgttgcggaatat
gcattagctttggcatcaaaacactgcacgagagctgtatatactgctccaattaaaacc
attagcaaccagaagtacagggatttttgtgggaaatttgacgttggccttctcactggg
gatgtaagtttgaggccagaggcttcttgtctcatcatgacaacagaaatactacggtca
atgctttataggggtgctgatatcatacgtgacattgaatgggttatatttgatgaagtg
cattatgttaatgatgtcgaacggggtgttgtttgggaagaagttattatcatgctccca
aggcatatcaatattatccttctttcagccacggtaccaaatacagttgaatttgctgat
tggattggtcggacgaaacaaaagaaaattcgtgtgacggggacaacgaaaagaccagtc
ccattggagcattgccttttttattctggagaactttataaaatttgtgaaagtgaagcc
tttatggctcagggtttgaaagctgctaaggatacatacaagagaaaaagttcaagtaca
gttggtggtggtactggtacatatcctggttttgcagcaggccatgaaggcagtcgagct
caaaaacgtgaaaattctttccggggcaagcagaacaagcattctggatcccactacttg
ggaaatttctctgggatgggtggtgggaaccaaaacaatggtagcaatcgggtgccctgg
agatcagaagcgtctttgtggttgttgcttatcaataatcttttgaagaagtcattattg
cctgtcattatattttgtttctcaaagaatcgctgcgacaaatcagctgataatatgaca
ggggtcgacctcacaagtagttccgagaaaagcgaaattcgggtcttctgtgacagagca
ttttccaggctaaagggatctgacaggaacctaccgcaggtggtgagagttcaaagcctt
ctccgcagaggaattggtgtacatcatgcggggctccttccgattgttaaggaagttgtt
gagatgcttttctgtcgtggtgtgattaaggttctattttctacggagacatttgcgatg
ggagttaatgccccagctaggacggtggtttttgataccttaaggaagtttgatggcaag
gaatttagacaattgcttcctggagaatacactcaaatggctggccgtgctggcaggaga
ggaattgataaaattggtacggtggttataatgtgccgtgatgagattccagaagagagt
gatttgacgcatgtcatagttggcagtgcaacaaggcttgaatctcaatttcgactgacc
tacatcatgattctacatctccttcgcgttgaagaattgaaggtggaggatatgttgaaa
cgaagctttgctgaatttcatgctcagaagaaactcccagagcagcaacaacttctaatg
agaaagcttgctcagtctacaataaccattgaatgtataaagggtgaaccgacaatcgag
gaatactatgagatgtattcagaggctgagaactatagcaaccagatatcagaggcaata
atgcaatcctcctcccaccaaacatttctttcaccaggaagagtcgtagtagtgaaatca
aaatcggctcaagatcacttgcttggagtcattgtaaaagcaccttctgttaatgctaag
cgatatgttgctttagtcctgacaccaaacttgccatcaactttgcaagctcccttgact
agtggtagtaggcaagatgagactgctgatttccagatactggtaccaaaagcaaaacgt
ggtttggacgatgattattattcttctgcctcttctcgtaaaggatcaggtgttatcaac
ataaaattacctcatcgtggtagtgctgctggtataaattatgaggttagggagattgat
agtggagagatcctatctatgtgcaattgcaaaatgaagattgatatagttgggcttcta
gaagataataaggctgctgcttattccaagaccgtgcaacagctattgaatctaaaatct
gatgggaagtaccctccggccctggatccagtgaaagatctgaagatgaaagacatgaat
cttgtggaagattattacaaatggaataacctgttgcagaagatggcacagaataaatgt
catgggtgtgtgagggtggaggagcacatcaaactagcaaaaggaataaaggagcataaa
gatgaagttaatgttctgaagtttcaaatgtcagatgaagcacttcagcagatgccggac
tttcagggtcgaatagatgttctgaaggaaattggctgcgtggactctgacctcgttgtt
cagatcaaaggacgcgttgcttgcgagatgaattctggggaggaattgatatgcacagaa
tgcttgtttgacaaccaactggatgacctggaaccagaagaagcggtggcaataatgtct
gcccttgtatttcagcagaagaatacttctaaaccttcttttacttctaagctgtcccag
gctaaacaaagattgtacgaaactgcactaagacttggggagcttcaagcccacttcaaa
ctacagattaatcccgaggagtatgctcaaaacaatctgaagtttggtcttgtcgaagtg
gtctacgaatgggcaaagggcactccatttgcagatatctgtgggcttacaaatgttcct
gaagggctaatagtgaggactattgtgagattggatgagacgtgccgtgaattcaagaac
gcggcatcaataatgggtaattctgcactgtacaagaagatggaatctgcatctaatgca
ataaagcgcgacattgtttttgcagctagcttgtacattaccggtgtctaa
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