Actinidia eriantha (wild kiwifruit): 130794719
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Entry
130794719 CDS
T09464
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC130794719
KO
K06100
symplekin
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130794719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aew03021
]
130794719
03019 Messenger RNA biogenesis [BR:
aew03019
]
130794719
Transcription machinery [BR:
aew03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130794719
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130794719
U7-dependent histone pre-mRNA processing factors
130794719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
130794719
NCBI-ProteinID:
XP_057512659
LinkDB
All DBs
Position
2:6130828..6170295
Genome browser
AA seq
1371 aa
AA seq
DB search
MAVNVNARPSDRIENRQFCRLYESRDLGLGSGPESAMVGIMAANTREKVASLVNLAKFAM
DIPSKLELLRPLKDELSLADSVLLADFLPLVIDLHTDRFSPVRKFITELIGDIGLKNVEC
IPEIVPVLMTLLKDRTPAVARQAISCGIDLFRSCLIKVAIQGLYSSGLDDSLASSWAWVL
KFRDEIYSIAFQPGSDGTRLPAVKFVEAVILLYTLDPSGSLEPPLHQVSEEKSVEFNISW
IRGGHPVLNVGDLSIEASQSLGVLLDELRLPTVKSLSNSMIIVLITSLSAIAKKRPAFYG
RILPVLLSLDPSSPVNKGVRVSGAHHALRKAFLSCLQCTHTGAAPWRDRLVSALSEMKGE
GLVEQTLHQVCQINGSVDRKDDIPITQEEKSSSVEGCDAVHSXFGRKRSGLQDPSDLADD
DVSGKRLRSTPTVSEGSEQDLSRDKVGIPSSGQALSRGDGDNGPVQQLVAMFGALVAQGE
KAIGSLEILISSISADLLAEVVMTNMRHLPPNCPKAEGDEEPSLNRGSSPNVVGCDAQFK
HLSSILTQLLSVSSAPMQMNILLDAQCSSSNDIENPQGDKELAVMAVSDNDVVCTVVRYE
SEQALVPVPVCSSDEVQSATETGVSALPSGVLDVGNLESGIPGLDSVAHSDRLAETLTVP
SLTPIDVEDASQEQVSSLSKSPLDLVPSLSTDRSEELSPKAAITDASSINSSTATSVGLS
AQFVLPKMSAPVIDLADEEKDTLQKLAFTRVVEAYKQIAIAGGSHVRFSLLAYLGMESPL
ELDPWKILKEHIFADYTNHEGHEFTLRVLFRLFGEAEEERDFFSSTTATSVYEMFILTVA
ETLRDSFPASDKSLSRLLGEAPYLPKSIFKLLESLCSPGSNDKDDKELHSGDRVTQGLST
IWNLILWRPPIRDVCLKIALQSAVHHLEEIRMKAIRLVANKLYPLSSIAQQIEDFAKEMV
HSVSNGDHAMDKIDGEGSEVQKDANFDKPSTQLLSLGAMTKNLSLDTSQSCISQNISSSS
LTEAQRCMSLYFALCTKKHSLFREIFTVYKSTSNIVKQAVHGQIPILVRTIGPSAELLEI
ISDPPTGSENLLIQVLHTLTDGTVPSPELVLTIRKLYDTKLKDVEILIPILSYLPKDEVL
LIFPHLVNLPLDKFQAALARVLQGSSRSGQVLSPAEVLIAIHGIDPDRDGILLKKVTDAC
NGCFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPALVDFIMEILSRLVNK
QIWKHPKLWVGFLKCALLTKPQSFSVLLQLPPAQLENALNRTAALKAPLIAHANQPNIRS
SLPRSVLAVLGIASESQNSNQAQPTPAHTGETGNSDKEAVTXKSKESSSAN
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggctgtaaatgttaatgccaggccgtctgatagaattgagaaccggcagttttgcaga
ttatacgaatcacgagacttagggttagggtcagggcctgagtctgcaatggtgggaata
atggctgcgaatacgagggaaaaggtcgcgagtctcgtaaacttggccaagttcgccatg
gacataccttcgaagctcgagctgctgcgtccgttgaaggacgagttgtcactggccgac
tcggtcttgctcgccgattttcttcctctcgttatcgacctccacacggatcgcttcagt
ccagttcgcaaattcattacagagttgattggtgatataggattgaagaatgtggaatgc
atacctgaaattgtacctgttttgatgactctactgaaagatcgaacaccagcagtcgct
cgacaagccattagttgtggaattgatttatttcgttcctgtctcataaaagttgcaatc
cagggtttgtactctagtggattggacgattcacttgcatcatcatgggcttgggtgcta
aagtttagggatgaaatatactcaatagctttccagccgggaagtgatgggacaaggtta
ccagcagtgaagtttgttgaagctgttattcttctttacacacttgatccgagtggctct
ttggagccaccacttcatcaagtctctgaagaaaagtctgtcgagttcaatatttcatgg
attcgtggaggtcatcctgtactcaacgttggggatttatcgattgaagcaagtcagagt
ctgggtgtgctgcttgatgagctcaggctcccaacagtgaaatctctcagtaactcgatg
atcattgtgctcattactagtctttcagcaattgcaaagaaaagacctgctttttacggt
cgcattctgccagtcttactaagtttggatccctcaagccctgtcaataaaggggttcgt
gtttctggggcacatcatgctttaaggaaggccttcctctcttgcttgcagtgtacacac
acgggtgctgcaccgtggcgtgatcgtctagttagtgcacttagtgaaatgaaaggtgag
ggattggtggaacaaacccttcaccaagtttgccaaattaatgggagtgtagatagaaag
gatgatataccaattactcaggaggagaagtcatcatcagttgaaggatgtgatgctgtg
cacagtnaattcgggaggaaaagatctgggctacaggatcccagtgacttggctgatgat
gatgtgtctggaaaacgtctcagatcaacacctactgtttcagagggatcagagcaagac
ttaagtagggataaggttggcattccttctagtggacaagcattgtctagaggagatgga
gataatggacctgtgcagcaacttgttgccatgtttggtgcattggttgctcagggtgag
aaagccattggttcattagagattcttatttctagtatctctgctgacttgctagctgaa
gtggtaatgactaatatgcgacaccttcctcctaattgccctaaagctgaaggggatgaa
gaaccatcgctgaatagggggtcttctccaaatgttgttggatgtgatgcccaattcaaa
catctatcttcaattctaacgcaactgctttctgtatccagtgctcctatgcagatgaat
attttattagatgcccaatgctcttcatccaatgatattgagaatcctcaaggggataag
gaactggctgtgatggctgtatctgataatgatgtcgtatgcactgttgtaagatatgaa
agtgaacaagcattggtacctgtcccagtttgttcttctgatgaagttcaatctgcaaca
gagactggtgtttcagctcttccatctggagtccttgatgttgggaatctagagagtggg
atacctggtctggattcagttgctcacagtgatagattggctgaaacactaacagttcca
tcattaacgccgattgatgtagaagacgccagtcaagagcaagttagtagtttgagcaag
tcaccactggatttagttccatcattatcaactgacagatctgaggaacttagcccaaaa
gcagctatcactgacgctagcagcattaactcctcaacagcaacttctgttggattgtct
gctcaatttgtcctgcccaagatgtcagcacctgttattgaccttgctgatgaagagaag
gataccttacaaaaattggctttcacacgagtcgtggaggcttataagcaaatagcaatt
gctggaggttcacatgttcgcttttctttacttgcctatttaggaatggagtcgcccctc
gagttggacccatggaaaatacttaaggagcatatatttgcggattatacaaatcatgag
ggacacgagtttacattgcgcgtcctcttcaggttatttggtgaagcagaagaggaacgt
gatttcttttcttcaacgactgctacatctgtatatgaaatgttcattctgactgtggct
gaaacacttcgagattcttttccagcttctgacaaatctctaagtagattgcttggcgaa
gctccttatctaccgaagtctatttttaaattgttagaatccttgtgttctcctgggagc
aatgataaagatgataaggagttacacagtggagatcgagttacgcaaggtctcagtacc
atatggaacctgattttgtggcggcctcctatccgggatgtctgtttaaaaattgcttta
cagagtgctgttcatcacttggaggaaatacggatgaaggctatacgcttggtggcaaat
aagctctatcctttatcatcaattgcacaacaaatagaagattttgctaaggagatggtg
cactctgtgagtaatggtgatcatgctatggacaaaattgatggggagggatctgaggtg
caaaaggatgccaactttgacaaaccttcaactcaactgctctcactgggtgccatgacc
aaaaatctctcccttgacacttctcagtcatgtatatcgcagaacatatcgtcctcttca
ttgactgaggcacagcgttgcatgtcactttattttgccctgtgtacgaagaagcactcc
ctttttcgtgagatattcacagtctataaaagcacatcaaacatagtaaagcaggcagtt
catggccaaatcccaatactagtgcgcaccattggcccatcagctgaacttcttgaaata
atttcagacccaccaaccggaagcgagaaccttttaatacaggttttgcatacattgaca
gatgggacagttccttctccagaattggtattgaccattagaaaattatatgatacaaaa
ctaaaggatgtggagattctaattccaatcctgtcatatttaccaaaagatgaggttttg
ctgatttttccacatcttgttaatctaccattagataagttccaagctgcacttgctcgt
gttttgcagggatcatctcgctctggtcaagtgctatctcctgctgaagtattgatcgct
atccatgggattgatcctgacagagatggaatactcttgaagaaggttacagatgcttgt
aatggttgttttgagcaacgacagatattcacccaacaagttctagcaaaggtcttgaat
caattggttgaacagattcctcttcccttattgttcatgcgtacagtcttgcaggctatt
ggtgcttttccagccctggtggattttatcatggaaatcctttctcgtcttgtaaacaag
cagatttggaaacacccaaagctatgggtaggattcttgaagtgtgctcttttaacaaag
cctcagtcttttagtgtgttgcttcagctacctcctgcacagcttgaaaatgcactaaac
agaacggcagcacttaaggcccccttgattgctcatgccaaccagccaaatattcgatct
tcacttccaaggtctgtgttggcagttcttggaattgcatcggaatctcaaaactcgaat
caggcacaaccaactccagctcatactggagagacaggcaattcagataaggaggcagtg
actngaaaatccaaagaatcatctagtgccaactaa
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