Actinidia eriantha (wild kiwifruit): 130795017
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Entry
130795017 CDS
T09464
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03013
Nucleocytoplasmic transport
aew03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130795017
03015 mRNA surveillance pathway
130795017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130795017
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130795017
5.6.2.5 RNA 5'-3' helicase
130795017
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130795017
mRNA cycle factors
Common to processing body (P body) and stress granule
130795017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
nSTAND3
UvrD-helicase
PhoH
ATPase
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
130795017
NCBI-ProteinID:
XP_057512957
LinkDB
All DBs
Position
15:4907828..4931285
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AA seq
1261 aa
AA seq
DB search
MDSQGNNLFETASQPDTATDAYTFLEFTSHGDDFEYPEFHELSQPIRSSVWPTQPSDAAS
DKASSSGHQSDASPVSAAGSAKGRGGGGGGSSQAAAVNAIAAGMSGLNFEEAGDDEVFEY
GKGDFTEHACRYCGVANPACVVRCNVPSCRKWFCNSRGNTSGSHIVSHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCP
LIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQP
VALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRIAYFVFPKED
NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVD
FVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELN
ASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSSS
DEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPL
VLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPALSE
FPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLT
HYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFFGGGPGIVPDTFGSVASSSPNSDR
RNSRSRGSYMPSGPPNGTHKPGVHPSGYSMPRVPLPPYHGVPPSQPYTIPTRGAVHGPVG
AVPHVPQPGHRGFGAGRGSAGTPIGSQLPHQHGSQQPIGSHGSPFNFPPLENPNSQPSVG
GPLSQPGFVSNMTVHGPSQTFHDGFSMGGMSQDFLGDDFKSQGSHVAYNVADFTQASQSG
YAVDYATQGAQAGFPGSFLNQNSQAGYSRFGTGNDFMSQDYMAHGSQGLFTQVGFSDPSQ
DDASQSNFGVANANPLQSQGLMNPLYSQPFAHYNTQPMNLQPMQQQQQGQSSQNQKLHYN
G
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagggcaacaacctcttcgaaacggcgtctcagccagacaccgccaccgac
gcctacaccttccttgagttcacgtctcacggcgacgacttcgagtaccccgaattccac
gagctctcccagccgattcgatcttcagtgtggcccacacagccgtccgatgccgcctcc
gacaaggcctcctcctccggccaccagtcggacgcctcgccggtctctgctgccggaagc
gccaaggggaggggcggcggcggtggagggagtagtcaggctgcagcagtgaacgcgatc
gcggcggggatgagcgggttgaacttcgaagaggctggggatgatgaggtttttgagtac
gggaagggggatttcactgagcacgcgtgtcggtactgtggagtggcgaatcccgcgtgc
gttgtgaggtgcaatgtgccgtcttgtcggaagtggttctgcaattcgcggggtaacact
tctgggtcgcatattgttagtcacctggttcgagctaagcacaaagaagtttgccttcat
aaagatagtcccttgggcgaaacaatccttgaatgttacaattgtggttgccggaatgtt
ttccttctcggtttcatatctgccaagacagaaagtgttgttgttcttctgtgcagggag
ccttgtctcagtgtcaatgcattgaaggacatgaattgggacctgagtcagtggtgcccc
cttattgatgatagatgttttttgcagtggcttgttaagatcccatctgagcaggagcag
ttgagggcacgccaaatcagtgctcaacaaataaataaggttgaggaactttggaagacc
aatcctgatgctacattggaagatcttgagaagcctggtgtggatgatgaacctcagcct
gttgccttgaagtatgaagatgcttatcagtatcaaaacgtgttcgccccacttatcaag
cttgaagctgactatgataaaatgatgaaagaatctcaaagcaaagacaacctaacaata
cggtgggatattggcctcaacaagaagcgcatcgcatattttgttttcccgaaggaagat
aatgagttgcgtctcgtacctggtgatgagttgcggctacgttattcgggcgatgcagct
catccagcttggcagtcagtgggacatgtgataaaattaactgcacaggaggaggttgct
cttgagcttcgtgccagtcagggggttcctgttgacgtaaaccatggttttagcgttgat
tttgtgtggaagagcacaagttttgatcggatgcagggggcaatgaaaacttttgctgtg
gatgaaacaagtgttagtgggtacatttatcatcacttgttgggccatgaagtcgaggtt
caaatggttcgtaatacattgcctcgtcgtttcggtgcacccggcttaccggagcttaat
gcatctcaagtttttgctgtaaaaagtgtccttcagaagccaattagtttgattcaaggt
ccacctggtactgggaaaactgtgacttctgccgcaatcgtatatcatatggccaaacaa
ggccaaggacaggttttggtttgtgcacctagtaacgtggctgttgaccagctagctgaa
aagatcagcgcaacagggttgaaggttgttaggctatgtgcaaaatctagggaagctgta
agttctcctgttgagcatttaacccttcactaccaggttcggcatcttgacacatctgag
aagagtgaacttcacaagttacagttgctaaaagatgaacaaggagaattatccagcagt
gatgagaaaaagtataaagctttgaagcgagcaacggaaagggagatatctcagagtgct
gatgtcatttgttgtacttgtgttggtgctggtgatcctcgattgtctaattttagattt
cgtcaggtccttattgacgaatctactcaagcaacagagcctgagtgtcttattcccttg
gttcttggagtgaagcaggtggttcttgtgggtgaccattgccagcttggtccagtcata
atgtgcaagaaagcagctcgtgctgggctagcccagtctctatttgagcgccttgtgcta
cttggtgtgaaaccaattagattgcaggttcaataccgcatgcatccggccctttcagaa
ttcccttctaacagcttttatgaaggtacacttcaaaatggggtgactatcaatgaaagg
ctatcttcaggcattgattttccttggcctgttccaaaccgtccgatgttcttttatgtt
cagatgggacaagaggagataagtgcgagtggaacgtcctatctaaaccggacagaggct
gcaaatgttgaaaaaattgtgaccacatttttaaggagcggtgtggttcctagtcagatt
ggggttataacaccatatgagggacaacgagcttatattgtaaactatatgtcgagaaat
ggtgctctcagacaacaactttacaaggaaattgaggttgcaagtgttgattcattccaa
gggagggaaaaagattacattattttatcttgcgtgagaagtaatgaacatcagggtatt
ggattccttaatgatccacggaggcttaatgttgcactcactcgtgctcgttatggtatt
gttattttggggaaccctaaagttctaagcaaacagccactgtggaatggtttattgacg
cactacaaggagcacgagtgtttggtggaagggccgctgaataacttaaagcagagtatg
gttcaatttcagaagcccagaaagatctataacgaccgccgacttttctttggtggtgga
cctggaattgtgcctgatacctttgggtctgttgcctcgtcaagtccaaactctgacagg
agaaacagccgttctaggggttcttatatgccttctggcccacccaatggtacccataag
cctggggtacatccttctggttattcaatgcctcgggttccccttccaccatatcacggt
gttcccccttcgcaaccgtataccattccaactcgtggggctgttcatggacccgttgga
gctgtaccacatgttcctcaacctggacaccgggggtttggggctggacgtggaagtgct
ggtactccaattggcagtcagcttccgcaccagcatggctcccagcaacctattggaagt
catgggtcacctttcaacttccctccactggagaatccaaacagccagccatctgttggc
ggaccattatctcagcctggatttgtatctaatatgacagttcatggaccaagtcaaaca
tttcatgatggtttctctatggggggcatgtctcaggatttcttgggtgatgatttcaaa
agccagggatcacatgttgcatataatgttgcagacttcacacaggcttctcaaagtgga
tatgctgttgattatgcgacacagggagcacaagctgggtttccgggaagctttctaaac
cagaattctcaggctggatattctcgctttggtacaggaaatgattttatgtctcaggat
tacatggctcacgggtcccagggtctatttacacaggttggattcagtgatccatctcaa
gatgatgcttcccagagcaacttcggtgtggccaatgctaacccacttcagtctcagggt
ttgatgaatcctctctactcccaaccttttgcccactacaatacacagccaatgaacttg
caacctatgcagcagcaacagcagggccagagctcccaaaatcagaaacttcactacaat
ggttga
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integrated database retrieval system
