Asticcacaulis excentricus: Astex_0118
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Entry
Astex_0118 CDS
T01378
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
aex
Asticcacaulis excentricus
Pathway
aex02020
Two-component system
aex02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aex00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Astex_0118
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Astex_0118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aex03021
]
Astex_0118
Transcription machinery [BR:
aex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Astex_0118
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
MLTR_LBD
Phage_CII
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
ADU11819
UniProt:
E8RNI8
LinkDB
All DBs
Position
1:complement(130276..131778)
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AA seq
500 aa
AA seq
DB search
MSLGQRLEIRQGQGLVITPQLQQAIKLLQLSNLELEAVVEAELERNPLLLREDNEPDSPD
TESDLPRDERGELELSDRDTQQANSDLDASEGDVYGDDEPTVREPVASSDIGDGPMIDWT
RAGKGGGFDGDGDTLDRAMSREKTLAEHLMDQALIAGFSAPEMAVAQILIDAVDEGGYLR
ADLTEIAERLGCAMDLIEKVLTVCQGFEPTGVMARSVPECLKLQLIERNRFDPAMAALID
NLELLARRDLSALRGACGVDDEDLAEMIRELKALTPRPGAAFGAEPQAGVVPDVFVRQDP
SGGWRVDLNSDTLPRVLVDQTYHAKVVTSARSDQEKTYLSECLSQANWLIKSLDQRARTI
LKVSAEIVRQQDGFFVYGIEHLRPLNLKTVAEAVGMHESTISRVTTNKYISTPRGVFELK
FFFTSAIAAADGSEAHSAESVRHKIKHLIEGEKSSGEVLSDDRIVEILKEAGVDIARRTV
AKYREALRIPSSVERKRMIR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtcattagggcaaaggctggaaattagacaagggcaggggctggtcatcacgccccag
ttgcagcaagcgatcaagcttctgcaattgtccaaccttgaactcgaggctgtggtcgag
gccgagctggagcgtaacccgctactgctgcgcgaagataacgaacccgatagccctgac
accgagtcagacctgcctcgcgacgaacggggtgagctggaactttctgaccgcgatacg
cagcaggccaattctgatctcgacgcctctgaaggcgatgtgtatggcgacgatgagccg
acggtgcgcgaacctgtggcgtcttccgacataggcgacgggcctatgattgactggacc
cgtgccggtaagggcggcgggttcgatggtgacggcgatacgctcgaccgagccatgagc
cgcgagaagacgctggctgaacacctgatggatcaggccctgatcgcgggctttagcgca
cctgaaatggcagtggcgcaaatcctgatcgatgctgtagacgagggcggttaccttcgc
gcggatctgacggaaatcgctgaacgcctcggctgcgctatggatctgatcgaaaaggtt
ctgactgtctgtcagggctttgaaccgacgggcgtcatggcgcgctcggtgccggaatgc
ctgaaactgcaactgatcgaacgcaatcgcttcgacccggccatggcggcgctgatcgac
aatctggagcttctcgcgcgccgtgacttgagtgcgcttcgcggagcctgtggcgtcgac
gacgaagacctggctgagatgatccgtgaactgaaggctctgacaccgcgtccgggcgcc
gccttcggggcggaaccccaggcgggtgtggtaccggatgtgttcgtgcgtcaagatcct
tcgggcggctggcgcgtcgatcttaacagcgacactctgccgcgtgtcctggtcgatcaa
acctaccacgccaaggtcgtgacctccgcgcgctcggatcaggaaaagacctatctcagc
gaatgcctgtcccaggccaactggctgatcaagagccttgaccagcgtgctcgcactatc
ctcaaggtgtcggcggaaatcgtgcgtcagcaggacggcttcttcgtctatggtatcgaa
catctgcgtccgttgaacctgaagacggtggcggaggctgtggggatgcacgaatccacc
atttctcgcgtcacaaccaataagtatatctcgacgccgcgcggcgttttcgaactgaaa
ttctttttcacctcggccattgccgcggccgatggctctgaggcccattcggcggagtcg
gtgcgtcacaagatcaagcacctgattgagggtgaaaagtcctctggcgaagtgctgtct
gacgaccgcattgtcgaaattctcaaagaggccggcgtcgatattgcccgccgcaccgtg
gccaagtaccgcgaagccctgcgcataccgtcttcggtcgagcgcaagcggatgatccgt
taa
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