Asticcacaulis excentricus: Astex_2820
Help
Entry
Astex_2820 CDS
T01378
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aex
Asticcacaulis excentricus
Pathway
aex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Astex_2820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aex03019
]
Astex_2820
Messenger RNA biogenesis [BR:
aex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Astex_2820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DASH_Spc19
Motif
Other DBs
NCBI-ProteinID:
ADU14458
UniProt:
E8RSI7
LinkDB
All DBs
Position
2:496250..497917
Genome browser
AA seq
555 aa
AA seq
DB search
MSKNKDELVFLPLGGSNEIGMNLNAYGFGPEHDRKWILVDVGVTFGDLTTPGIEVIVPDP
KFLEGEEILGVILTHAHEDHIGALGWLWDRIKAPLYATPFTAFLIREKLREAGVEDFDLT
EVPLGGKVHLGPFEIDYITITHSIPEPNGLSIKTPLGTVLHTGDWKIDPDPITGKPTDIS
RIVALGDEGVLAMVCDSTNVFVDGQAGSEADVKVSLEAVIRTLTGRVAVACFASNVARMD
SVIRAAEACGRSVCLVGRSMHRMAAAAKFVGLMKGVQEFVSEAEAVKMKDTEVLYLCTGS
QGEPRAALSRIADGNHPLVRLGAGDSCVFSSRVIPGNEIAIRSLQNRLSDLGVEIHTEKD
HPGIHVSGHPCRDELKQMYAWARPKIAIPTHGERRHLQKHAALAAEIGIPEQVVLRNGDM
VRLAPGKPEIIDEVPSGRLFVDGGMLVPEASEALRERRHAAHNGMLFVSFALNSKNQLAS
YVEVRGLGLAFEDEDSISDQLEKLCDLAEKAVQKLSREERDDDQTVETAVARVLKKAAQN
TWGRRPIVETIILRL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaataaagacgaactggtgtttctgccgctgggcggctcaaacgaaatcggt
atgaacctcaatgcgtacggtttcgggccggagcatgaccgtaaatggattctggtcgat
gtcggtgtgaccttcggcgacctgactacgcccggcatcgaagtcattgtgcccgacccc
aaattcctcgaaggcgaagagattctgggtgtcatcctgacccacgcccacgaagaccat
atcggggcgctgggctggctgtgggaccgcatcaaggcgccgctctatgccacgcccttc
actgccttcctcatccgcgaaaagctgcgcgaagcaggtgtcgaagacttcgacctgacc
gaggttccgctgggtggcaaggtgcatctgggcccgttcgagatcgactatatcaccatc
acccactcgatcccggaacccaacggcctgtccatcaaaacgccactggggacggtgctg
cacaccggcgactggaagattgacccggaccccatcaccggcaaacccaccgacatcagc
cgcattgtggctctgggcgatgagggcgtgctggccatggtctgcgactcgaccaatgtg
ttcgtggacgggcaggcgggctccgaagcggatgtgaaggtgtcgcttgaggcggtgatc
cgtacactgacgggtcgcgtggcggtggcttgcttcgcctctaatgtcgcccgcatggac
agcgtcatccgcgccgccgaagcctgtggccgttcggtctgccttgtcgggcgctcaatg
caccgcatggcggcggctgccaaatttgtcggtctgatgaagggcgttcaggaattcgtc
tccgaagccgaagccgtcaagatgaaagacaccgaagtcctttatctgtgcacgggctct
cagggcgaaccgcgcgccgccctgtcgcgtatcgccgacggcaaccatccgctggtgcgt
ctgggggccggggattcctgcgtcttctcttcacgcgtcattccgggcaacgaaatcgcc
atccgcagcctgcaaaaccgcctgtcggacctcggtgtggaaattcataccgaaaaggat
caccccggcatccacgtctctggccacccctgccgcgacgaactgaagcagatgtacgcc
tgggcgcggccgaaaatcgccattccgacgcacggtgaacgccgccacctgcaaaagcac
gccgctctggcggccgaaatcggcatcccggaacaggtcgtcctgcgcaatggcgatatg
gtgcgcctcgctcctggtaagcccgaaatcatcgacgaagtgccgtctggtcgcctgttt
gtcgatggcgggatgctggtccccgaagcctccgaagccctgcgtgagcgccgccatgcc
gcccataacggcatgttgttcgtctccttcgccctcaacagcaagaaccagttggcgtca
tacgtcgaggtccgcggcctcggtctggcctttgaggacgaagacagcatctcggatcag
ctcgaaaagctgtgcgatttagcagaaaaagccgtgcagaagctttcccgcgaagaacgc
gacgatgatcagaccgtcgaaaccgccgtggcgcgcgtgcttaaaaaggccgctcagaat
acttggggccgccgaccgatcgtagagacgattattcttagactgtaa
DBGET
integrated database retrieval system
