Asticcacaulis excentricus: Astex_2996
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Entry
Astex_2996 CDS
T01378
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aex
Asticcacaulis excentricus
Pathway
aex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Astex_2996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aex03019
]
Astex_2996
03009 Ribosome biogenesis [BR:
aex03009
]
Astex_2996
Enzymes [BR:
aex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Astex_2996
Messenger RNA biogenesis [BR:
aex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Astex_2996
Ribosome biogenesis [BR:
aex03009
]
Prokaryotic type
rRNA processing factors
Astex_2996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADU14632
UniProt:
E8RT11
LinkDB
All DBs
Position
2:686900..689584
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AA seq
894 aa
AA seq
DB search
MSKTMLIDATHAEETRVVVLNGSKVEEFDFESHARKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREKLMAELAAQAAANGHDDAEDEDHEDDGDDLPDE
ERRLRAHLIKRYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARG
GGISRKITNGADRKRLKAVAQSLDVPQGMGLIVRTAGAKRTKTEIKRDYDYLLRVWENIR
ETTLRSNAPALIYEEEDLVKRAIRDLFDKDFDHVQVEGVEGYKSAKDFMRMIMPSQAKKI
QLYNGGMPLFARHGIDDILNRIYSPVVPLRSGGYLVINQTEALVAIDVNSGKSTKERNIE
ATALKTNLEAAEEAARQMRLRDLAGLVVIDFIDMDESKNNRAVEKKLKDALSEDRARIQM
GKISGFGLMEISRQRRRTGFLEGTTVICPHCEGMGRVRSTDSSALAAMRAIDLEAMTNGA
GAITIKLPQAVALYILNEKQVHLAKLRLEWGLKVNVEIDSDLNHAEFEIVRTVHADEVEF
TPPPRPDPIIDLGPDPDYDEDEDEDVIAIDEEAIEREDTDDDEASDRAEAREDREDRRGR
RRRRRRGRQDNEPRVEADTAEAEASDSEADSEDEDGDEDGDFRRNRRRRRGRRGGRRNGP
DARPREAYAWVRARTPSLEEPYVWIDPFDESQGKRAPNPGETPDGFDVIEVATEANQTVV
IETSAESASVLGAATQAPTSLVPEDLRDQPAPKGKRPPRKRRGKAEAEASETVETIAEPA
VMETAPEPVTDAVPEAVTETAAEEVAKPARKSRSRKKKTDEPVAEVAAEPTLTVEPAVEP
APVEVMVEPVAEPAPEPVLESEPLGGSFAPTAPEPDPAEINTPPAKPKRGWWRK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaccatgttaatcgacgcgacgcacgcggaagaaacccgcgtcgtcgttctg
aacggctcaaaagttgaggaattcgattttgaaagccacgcccgcaagcagttgcgcggc
aatatctatctcgccaaggtcacccgcgtagagccctcgcttcaggcggccttcgtggaa
tatggcggcaaccgccacggctttctggccttcaacgaaatccacccggactattatcag
atcccggtcgccgaccgcgaaaaactgatggccgagctggcggcgcaggccgccgctaac
ggccacgacgatgccgaggacgaggatcacgaagacgacggcgacgacctgccggacgag
gagcgccgcctgcgcgcccacctgatcaagcgctacaagattcaggaagtcattaagcgt
cgtcagatcctgctggtgcaggtcgttaaggaagagcgcggcaacaagggcgcggcgctc
accacctatctgtcgctggccgggcgctactgcgtgctgatgcccaatacggcgcgcggc
ggcggcatcagccgcaagatcaccaatggggctgaccgcaagcggctgaaggccgtggcg
cagtcgctggacgtgccgcagggcatgggcctgatcgtgcgcacggccggggccaagcgc
accaagaccgagatcaagcgcgactatgactacctgctgcgcgtgtgggaaaacatccgc
gagacgacgctgcgctccaacgccccggcgctgatctatgaggaagaagacctcgtcaag
cgcgccatccgcgacctcttcgacaaggatttcgaccacgtgcaggtcgagggcgtcgaa
ggctataagtccgccaaggacttcatgcgcatgatcatgccgtcgcaggcgaagaagata
cagctttataatggtgggatgccgctgtttgcgcgccacggcatagatgacatcctcaac
cgcatctattcgccggtcgtgccgctgcgttcgggcggctatctggtcatcaaccagacc
gaagctctggtcgccatcgacgtcaactccggcaaatcgaccaaggaacgtaatatcgag
gcgacggcgctcaagaccaatcttgaggctgccgaagaggccgcgcgtcagatgcgtctg
cgcgatctggccggtctggtggtcatcgacttcatcgacatggatgagtcgaagaacaat
cgcgccgtcgaaaagaagctcaaggacgccctcagcgaagaccgcgcccgcatccagatg
ggcaagatttctggcttcggcctgatggaaatcagccgtcagcgccgccgcaccggcttc
ctcgaaggcacgacggttatctgcccgcactgcgaaggcatgggccgcgtccgttcgacc
gattcctcggccctggccgccatgcgcgccatcgaccttgaggccatgaccaatggcgcc
ggcgccatcaccatcaagctgccgcaggccgtggccctgtatatccttaatgaaaagcag
gtgcatctggccaagctgcgtctcgaatggggcctgaaggtcaatgtcgagatcgactcc
gacctgaaccacgccgaatttgagatcgtgcgcaccgtgcacgccgatgaggtggagttc
acgccgccgccgcgtcccgatccgatcatcgacctgggtccggacccggactatgatgag
gacgaggacgaagacgtcatcgccatcgacgaagaggctatcgaacgcgaagacacggac
gatgatgaggcctcggaccgcgccgaagcgcgtgaggatcgcgaggatcgtcgtggccgc
cgccgtcgccgtcgccggggccgtcaggacaacgagccgcgcgtcgaagccgacacagcg
gaggccgaggccagcgactccgaggccgacagcgaagacgaggatggcgacgaagatggc
gatttccgccgcaaccgtcgccgccgtcgcggccgccgcggtggtcgtcgcaacggaccg
gacgcccgtccgcgtgaggcctatgcctgggtgcgcgcccgcacaccgtcgctggaagaa
ccatatgtgtggatcgacccgttcgacgaatcgcaaggcaagcgcgccccgaatccgggc
gaaacgccggatggtttcgatgtgatcgaggtcgctaccgaggccaaccagaccgtcgtc
atcgaaaccagtgcagagtctgcatcggtattaggggctgccactcaggccccgacctcg
ctggtgcccgaagacctgcgcgatcagccggcccccaagggcaagcgtccgccgcgcaag
cgtcgtggcaaggccgaagccgaagcgagcgaaacggtcgagaccatcgctgagcctgcc
gtgatggaaacggctccggagccggtcactgatgccgtgccagaagccgttaccgaaaca
gcagctgaagaggttgccaaacccgcgcgcaagtcccgctcgcgcaagaagaagaccgac
gagccggtggccgaggtcgccgcagaacccacactgaccgtcgaaccggcggtggaacct
gcgccggtcgaagtcatggtggaacccgtggccgaacccgcaccggaacccgtgctggaa
agcgaaccattgggcggcagcttcgcccccaccgcgcctgagcccgacccggcggaaatc
aacaccccgcccgccaagcccaagcgcggctggtggcgcaaataa
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