Actinopolyspora erythraea: CDG81_05420
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Entry
CDG81_05420 CDS
T05020
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aey
Actinopolyspora erythraea
Brite
KEGG Orthology (KO) [BR:
aey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aey03019
]
CDG81_05420
Enzymes [BR:
aey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDG81_05420
Messenger RNA biogenesis [BR:
aey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDG81_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
nSTAND_NTPase5
T2SSE
PhoH
NACHT
AAA_30
SLFN-g3_helicase
AAA_16
DUF8012
Exportin-T
Motif
Other DBs
NCBI-ProteinID:
ASU77843
UniProt:
A0A099D1Y1
LinkDB
All DBs
Position
1194859..1198818
Genome browser
AA seq
1319 aa
AA seq
DB search
MATAPVSPSLSELRDRLTDLMPHDHRRLRRRIEGAHKIRDQEALRGVVAEISADITAAHE
RVTRRRERLPEITYPEELPVTARREDLMTAIRDNQVVIVAGETGSGKTTQLPKMCLELGR
GILGSIGHTQPRRLAARTVAERVAAELDTEVGGAVGYQVRFTERAGEDTLVKQMTDGILL
AEIQRDRLLRRYDTLIIDEAHERSLNIDFILGYVKQILPKRPDLKVIITSATIDPERFSR
HFDDAPIVEVSGRTYPVEVRYRPLVDDSDELEDVERDQITAIGDAVDELCAEGPGDILVF
LSGEREIRDTAEALEQRKPARTEVLPLYARLSSAEQQRVFQRHSTRRIVLATNVAETSLT
VPGIKYVIDPGTARISRYSYRTRVQRLPIEAISQASANQRKGRCGRESEGICIRLYSERD
FLDRQEFTDPEILRTNLASVILRMTSLGLGDVASFPFVEPPDRRQITDGVNLLHELGALE
QPTKGGKQDNQRLTRIGSKLAQLPIDPRLARMIVEAETNGCVHETMVIAAGLSIQDPRER
PAEHQQAADQQHARFANKQSDFLAYLNLWQYLREQRGELSGSRFRRMCREEYLNYLRVRE
WQDLYGQLRQMVNSLDISINDQPADEDRIHQSLLAGLLSHIGLKDTERKSGANRRSTSEY
LGARGAKFAIFPGSALFKKQPQWVMAAELVETSKLWARTVAKVEPAWIERLAGHLVKRHY
SEPHWEKDKGAVMAYERVTLYGVPLVSGRKVNYGRIEPELCRELFIRHALVEGDWDTRHE
FFHTNRRLLAEVEELEQRARRRDIVVDDDTLHDFYDQRVGAEVVSARHFDTWWKKVRRER
PDLLTFPRSLLFNETSAGVTDTDYPDFWQQGRHRLRLSYQFEPGSDADGVTVHVPLAVLN
QLGPGGFDWQIPGLREELVTSLLKTLPKQWRREFVPVPDHAKAVLARLRPHEEPLLEALS
NELRRMTGVTVPPEAWDPQRVPDHLRMTFRVVDGDGDGGEERVLAEGKDLEELAERLRPR
LRAEISAAAETIERHGLREWDFGKLPGTFERQRNGQVVKAYPALVDEGDSVGIRAFDTAA
EQREQQRRGARRLVLLNLPSPAKFLRRQLTNSAKLVFGRSPHGDQERLFEDCIACAADVL
IEQAGGVPSDQEAFDRVVQRVRAGLNETSAHVVSAVERILTIQQRVESEVEGTRSLSADA
AEDIRTQLSNLVYPGFVTDAGWWRLADLRRYLSAVSYRLQKVAHHPARDRDLMDRIRSVE
RRYQEMLDSVGEGEPVGERLWSVGWMIEELRVSYFAQELGTPRSISEKRIHREMDKLQP
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcacccgtttcgccctcgctgtccgaactgcgcgaccgcctgaccgacctc
atgccgcacgaccaccggcggttgcggcggcgcatcgaaggcgcgcacaagatccgcgac
caggaggcgctgcgcggcgtcgtggcggagatctcggccgacatcaccgccgcccacgag
cgcgtcacgcgtcgcagggagcggcttcccgagatcacctatcccgaggagctgcccgtc
acggcgcggcgggaggacctgatgaccgccatcagggacaaccaggtggtcatcgtcgcc
ggggagaccggctccggcaagaccacgcagctgccgaagatgtgcctggagctcggccgg
gggatcctcggctcgatcggccacacccagccgcgcaggctcgccgcgcgcaccgtcgcc
gagcgcgtcgcggccgagctcgacaccgaggtgggcggcgcggtcggctaccaggtccgt
ttcaccgagcgtgccggtgaggacacgctggtcaagcagatgaccgatggcatcctgctg
gccgagatccagcgggaccggctgctgcggcgctacgacacgctgatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcatcctcggctacgtcaagcagatccttcccaaa
cgccccgacctcaaggtgatcatcacctcggcgaccatcgacccggaacggttctcccgg
cacttcgacgacgccccgatcgtggaggtctccggtcgcacctatccggtcgaggtgcgc
taccggccgctggtggacgactccgacgagttggaggacgtcgagcgcgaccagatcacc
gccatcggggacgcggtggacgagctgtgcgccgaggggcccggggacatcctggtcttc
ctcagcggcgaacgggagatccgcgacaccgccgaggccctggagcagcgcaagccagcc
cgcaccgaggtgctgccgctgtacgcgcggctgtcctctgccgaacagcagcgggtgttc
caacggcactccacgcggcgcatcgtgctcgccaccaacgtcgccgagacctcgttgacc
gtgccggggatcaagtacgtcatcgatccgggaaccgcccggatatcccgctacagctac
cggacgagggtgcagcggctgcccatcgaggcgatctcgcaggcctccgccaaccagcgc
aagggccgctgcgggcgggagtccgaggggatctgcatccggctgtactccgagcgcgac
ttcctggaccggcaggagttcaccgatccggagatcctgcgcaccaacctcgcctcggtg
atcctgcgcatgacctctctggggttgggggacgtggcgtccttccccttcgtggaaccg
ccggaccggcggcagatcaccgacggggtgaacctgctgcacgagctgggtgccctggaa
cagcccaccaaagggggcaagcaggacaaccagcggttgaccaggatcggctccaagctg
gcgcagctgccgatcgaccccaggctggcgcggatgatcgtcgaggccgagacgaacggc
tgcgtgcacgagacgatggtcatagccgcgggcctgtccatccaggaccccagggaacgt
cccgcggagcaccagcaggcggccgaccagcagcacgcccggttcgccaacaagcagtcc
gacttcctggcctacctcaacctctggcagtacctgcgtgaacagcgcggggagctgtcc
ggcagccggttccggcggatgtgccgcgaggagtacctcaactacctgcgggtgcgggag
tggcaggatctctacgggcagctgcggcagatggtcaactccctcgacatctcgatcaac
gaccagcccgccgacgaggaccggatacaccagtcactgctggcggggctgctctcgcac
atcgggttgaaggacaccgagcgcaagtcgggggccaaccggcgttccacgagcgaatac
ctcggggcgcgcggggccaagttcgcgatcttccccggctcggcgctgttcaagaagcag
ccgcagtgggtgatggccgccgagctggtggagacctcgaagctgtgggcgcgcaccgtg
gcgaaggtcgagcccgcctggatcgaacgtctggccgggcatctggtcaagcgccactac
agcgagccgcactgggagaaggacaagggtgcggtgatggcctacgagcgggtgacgctc
tacggcgttccgctggtgtccggtcgcaaggtcaactacggtcgcatcgagcccgaactc
tgccgggagctgttcatccggcacgccctggtcgagggtgactgggacacccgccacgag
ttcttccacaccaaccgccggctgctggccgaggtggaggagctggaacagcgcgcccgc
cgtcgcgacatcgtcgtcgacgacgacaccctccacgacttctacgaccagcgggtcggt
gccgaggtcgtctccgcccggcacttcgacacctggtggaagaaggtccgccgggagcgg
cccgacctgctcaccttcccgaggtcgctgctgttcaacgagacctccgccggcgtgacc
gacaccgactaccccgacttctggcaacagggcaggcaccgcctgcggttgagctaccag
ttcgaaccgggcagcgacgccgacggggtcaccgtgcacgtgccgctcgcggtgctcaac
cagctcggtcccggtggtttcgactggcagatccccggtctccgggaggagctggtcacc
tccctgctcaagacgttgccgaagcagtggcggcgcgagttcgtaccggttcccgatcac
gccaaggcggtgctggcgcggctgcgaccgcacgaggaaccgctgctggaagcgctttcc
aacgagctgcgccgcatgaccggggttaccgttccgccggaggcctgggacccgcaacga
gtgcccgaccacctgcggatgaccttccgggtggtggacggcgacggggacggcggcgag
gaacgagtcctggcggagggcaaggacctcgaagagctcgccgaacggttgcgcccccgg
ctgcgggccgagatatcggcggccgccgagaccatcgagcggcacggcctgcgggagtgg
gacttcggcaagcttcccggcaccttcgagcgccagcgcaacggccaggtggtcaaggcg
tacccggcgttggtcgacgagggcgacagcgtcggcatccgcgccttcgacacggccgcc
gagcagcgggaacagcaacgtcgtggtgcgcgccggctggtgctgttgaacctgccctca
ccggcgaagttcctgcggcgccagttgacgaactcggcgaagctggtgttcgggcggagt
ccgcacggggaccaggaacgcctgttcgaggactgcatcgcgtgcgcggctgacgtactc
atcgagcaggccggtggggtcccctccgaccaggaagccttcgaccgggtggtccagcgg
gtgcgtgccgggctgaacgagacctcggcgcacgtcgtctccgccgtggagcggattctc
accatccagcagcgcgtcgagtccgaggtggagggaacgcgctcgctctcggcggacgcg
gccgaggacatccgcacgcagctgtccaacctggtctacccggggttcgtcacggacgcg
ggctggtggcggttggccgatctgcggcgctacctcagcgcggtctcctaccggttgcag
aaggtcgcccaccaccccgcgcgggaccgcgacctcatggaccggatccggagtgtggag
cgccgctaccaggagatgctcgactccgtcggggagggcgaaccggtcggggagcggctc
tggtcggtcggttggatgatcgaggaactgcgggtgagctacttcgcgcaggaactcggg
acgccgcgctcgatctcggagaagcggatacaccgggagatggacaagctccaaccctga
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