Aeromicrobium chenweiae: C3E78_11280
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Entry
C3E78_11280 CDS
T05410
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aez
Aeromicrobium chenweiae
Pathway
aez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3E78_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aez03019
]
C3E78_11280
Messenger RNA biogenesis [BR:
aez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3E78_11280
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AWB92736
UniProt:
A0A2S0WN53
LinkDB
All DBs
Position
complement(2336640..2338319)
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AA seq
559 aa
AA seq
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MSHMHLELGAPPALPEGALRVIPLGGLGEIGRNMTVFEYDGKLLIVDCGVLFPEEHQPGV
DLILPDFGPIRDRLKDVVGIVLTHGHEDHIGGVPYLLRERGNIPVIGSKLTLAFLDPKLK
EHRLKDAPKHVVSEGDVESFGPFELEFVAVNHSIPDALAVAIKTPAGVALHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERNITPAIDAVFASSQKRIIVA
SFASHIHRVQQVIDAAVKHDRKVAYVGRSMVRNMQIARELGYLHVPDGVVVDKIDAAPPH
KMVLMSTGSQGEPMAALSRMANNSHQQVSLEPGDTVLMASSLIPGNENAIYRVIDGLTKL
GANVVHKGNALVHVSGHASAGELLYCYNIVQPSNVLPVHGEIRHLHANAKLASATGVPNV
LLAEDGYVIDLVDGHASITGAVECGYVYVDGSSVGSLTDSELKDRRVLGEEGFISVVVVV
DSATGKIVSGPEIHARGIAEEDSAFDEIMPKIIAALEESIADGTRDSGQLQQVIRRVLGS
FVGRRLRRRPMILPVVIQA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagccacatgcacctggagctcggcgctccgcccgcactgcccgaaggcgccctgcgc
gtcatccccctcggcggactcggagagatcggtcgcaacatgaccgtcttcgagtacgac
ggcaagctgctgatcgtcgactgcggcgtcctcttccccgaggagcaccagcccggcgtc
gacctgatcctgcccgacttcggacccatccgggaccgcctgaaggacgtcgtcggcatc
gtcctgacgcacgggcacgaggaccacatcggcggcgtcccgtacctgctgcgcgagcgg
ggcaacatccccgtcatcggctccaagctgaccctcgccttcctggaccccaagctcaag
gagcaccggctcaaggacgccccgaagcacgtcgtctccgagggcgacgtcgagtcgttc
ggccccttcgagctcgagttcgtcgcggtcaaccactcgatccccgacgccctggccgtc
gcgatcaagacgccggccggcgtcgcgctgcacaccggcgacttcaagatggaccagctg
ccgctcgacggccgcatcaccgacctacgcgcgttcgcccggctcggcgaggagggggtc
gacctcttcctgaccgactccaccaacgccgaggtccccggcttcacgacgtccgagcgc
aacatcacgcccgcgatcgacgcggtcttcgcgtcgagccagaagcgcatcatcgtcgcg
tcgttcgcctcgcacatccaccgcgtccagcaggtcatcgacgccgcggtcaagcacgac
cgcaaggtcgcgtacgtcggacgctcgatggtgcgcaacatgcagatcgcccgcgagctg
ggctacctccacgtgccggacggcgtcgtcgtggacaagatcgacgccgcaccgccgcac
aagatggtcctcatgtcgaccggctcgcagggcgagccgatggcggcgctgtcgcgcatg
gccaacaacagccaccagcaggtcagcctcgagccgggcgacaccgtgctcatggcgtcg
tcgctgatcccgggcaacgagaacgcgatctaccgcgtgatcgacgggctgaccaagctc
ggcgccaacgtcgtccacaagggcaacgcgctggtgcacgtctcgggccacgcatcggcc
ggcgagctgctctactgctacaacatcgtccagccgagcaacgtcctgccggtgcacggc
gagatccgtcacctgcacgcgaacgccaagctcgcgtcggcgaccggcgtgcccaacgtg
ctgctggccgaggacggctacgtcatcgacctcgtcgacgggcacgcgtccatcacgggc
gccgtcgagtgcggctacgtgtacgtcgacggctcgtccgtgggcagcctgaccgactcc
gagctcaaggaccgccgggtgctgggcgaggagggcttcatctcggtcgtcgtggtcgtc
gactcggccaccggcaagatcgtctccggcccggagatccacgcccgcggcatcgcggag
gaggactcggcgttcgacgagatcatgccgaagatcatcgccgcgctggaggagtccatc
gccgacggcacccgcgactccggacagctgcagcaggtcatccgtcgcgtcctgggctcg
ttcgtgggacgtcgcctgcgtcgccgtccgatgatcctgccggtcgtcatccaggcctga
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