Alcaligenes faecalis ZD02: UZ73_02060
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Entry
UZ73_02060 CDS
T04157
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
afa
Alcaligenes faecalis ZD02
Pathway
afa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UZ73_02060 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afa03021
]
UZ73_02060 (rho)
03019 Messenger RNA biogenesis [BR:
afa03019
]
UZ73_02060 (rho)
Transcription machinery [BR:
afa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UZ73_02060 (rho)
Messenger RNA biogenesis [BR:
afa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UZ73_02060 (rho)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
ALO37150
UniProt:
A0A0A2NC16
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All DBs
Position
444230..445486
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AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAATLEIDNANRLRKQELMFAIMKKHAKKGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GMQPEAIKHRIMFENLTPLHPDQPMRLERDIKSEENITGRILDIFSPIGKGQRALIVASP
KSGKTVMMQHMAHAITTNYPEAIMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEIHLERRLAEKRIYPAINL
NKSGTRREELLIKPDLLQKVWVLRKFIHGMDEIEAMEFILDKIRATKTNSEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgaacgaattaaaagctctgcacgtctcgcagctgctagaaatggctgccact
ctggaaatcgacaacgcgaaccgcttgcgcaagcaagagctgatgttcgccatcatgaaa
aagcacgccaaaaaaggcgagcagattttcggtgacggggtgcttgaagtcctgcctgat
ggttttggtttcctgcgttcgcccgaaacctcgtacctggccagcacagacgatatttac
atctccccttcgcagatacgccgtttcaatctgcacacgggtgactccattgaaggtgaa
gtgcgcacccctaaagacggcgagcgctactttgccctggtcaaggtggacaaggtcaac
ggcatgcagcccgaggccatcaaacatcgcatcatgtttgagaacctgaccccgctgcac
cccgatcagcccatgcgcctggagcgcgacatcaaaagcgaagagaacatcacaggtcgt
atcctggatatcttctcgcctatcggtaaaggccagcgcgccctgatcgtggccagcccc
aaatccggtaaaaccgtgatgatgcagcacatggctcacgccatcacgaccaattacccc
gaggccatcatgatcgtcctgctggtggacgagcgccccgaggaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtggcctccacctttgatgaacccgccacgcgtcacgtg
caagtggccgagatggtcattgaaaaggccaaacgcctggttgaattgaaaaaagacgtg
gtgatcctgctggactccatcactcgtctggctcgcgcctacaacaccgtggtccctgct
tcgggcaaggttttgaccggtggtgtggacgccaacgccctgcagcgccccaaacgcttt
tttggcgctgcccgtaatctggaagaaggtggctccctgaccatcatcggtactgccctg
atcgaaactggcagccgcatggacgaagtcatctatgaagaatttaaaggtaccggtaac
tccgaaatccatctggagcgccgtctggccgagaaacgcatttaccctgccatcaacctg
aacaaatcaggtacacgtcgtgaagagttgctgatcaagcccgaccttctacaaaaggtc
tgggtcctgcgcaagttcatccatgggatggatgaaattgaagccatggagtttatcctg
gacaaaatccgggccacaaagaccaactccgaattcttcgacatgatgaagaagtaa
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