Alcaligenes faecalis ZD02: UZ73_03390
Help
Entry
UZ73_03390 CDS
T04157
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
afa
Alcaligenes faecalis ZD02
Pathway
afa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UZ73_03390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afa03019
]
UZ73_03390
03009 Ribosome biogenesis [BR:
afa03009
]
UZ73_03390
Enzymes [BR:
afa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UZ73_03390
Messenger RNA biogenesis [BR:
afa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UZ73_03390
Ribosome biogenesis [BR:
afa03009
]
Prokaryotic type
rRNA processing factors
UZ73_03390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ALO37396
LinkDB
All DBs
Position
724820..728146
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSY
GEERHGFLPFKEVARSYFKDGVDVRSARIQDALVEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAMDQLDIPQGMSIIARTAGIGRSVEELQ
WDLNYLMQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAA
AFMSVVMPDNLHRVKMYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAI
DVNSARSTRGADIEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHLDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLQEEAMKEGTAALHAQVPVDVATFLLNEKRADITKIESRLNIALILIPNKNLETPH
HIIERLRHDDPRLDELRSSYELVQQPEQQDSLVPHRSHEIKPRPEALVKSTTPAQPAPMS
KPAAAAAASAAASDNKPGLLKRLLNWLSGAPAEPVAETTKTEGSKSSSGRRQGRPGQSNG
GRGQGGRGRRQSNRPEAAQEEKASPESTGGNTRGRRRNASAGNESALETAQSPSANATPA
TADEGSSNSRNPRNRRGRGRQRREEGSAENVELNKDVNSTEAQPEQAAAAVAGVAAAAAV
AATKQEAQNRAEQLAETDSTDTSDNSDAETDENSENGALDPERKRRRRRSRRGRRNTDAN
AVAENEENNEEGNTNAYVAHETPSFNPAALDAQEQAAAQTAAAEPEQPKAAVEAPVAQEA
TPVAVEVAQEAPAATEAAQQAEEVATTQAAAVETAPAQEEVAVQAEAAPEAPAAEETVAP
VQAEAAAEPTKAEVIETQAEAVETAAAPAEAQPAAEAPAVEAAPVETAAVETAAAQEETA
PVAEVAPETPAAEEAVAPAQAEAAAEPVKAEAVEAQAEAVETVATPAEAQPAAEAPAVEA
APVETAAVETRVETQAAAAQAPATEQAQKPAAAPLEAVLNAAGIELVETARSATQDDYQP
APVRLGRPRKQRVAETENSEPLQQVETQ
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcatcaagaagaactacgcgtcgccattgtcgac
ggtcaaaaactgattgacctcgacatcgaaacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggggtcatcacccgcatcgaacccggcctggaagcctgcttcgtcagctac
ggtgaagagcgtcacggctttctgcctttcaaggaagtggctcgcagctacttcaaggac
ggggttgatgtacgcagcgcccgcatccaggatgccctggttgaaggccaggaactgatt
atccaggttgaaaaagaagagcgtggcaacaagggcgccgccctgaccaccttcatttcc
ctggcaggccgctatctggtcctgatgcccaacaacccccgtgggggtggcgtttcgcgc
cgcgttgaaggcgaagaccgccaggaactgcgcgaagccatggaccagctggacattccg
cagggcatgagcatcatcgcccgcaccgcaggtatcggccgcagcgtcgaagaactgcag
tgggacctgaactacctgatgcagctgtggaccgccattgatggcgcggcccgcgacaat
gctgcccctatcctgatttatctggaatccagcctggttatccgggccatccgcgattac
ttctcgcccgatattggcgagatcctgatcgacacggacgaaattcacgagcaggccgcc
gctttcatgagcgtggtcatgcccgacaatctgcatcgcgtgaagatgtaccgcgatgac
atccccctgttctcgcgctttcagatcgaacaccagatcgaaaccgcctattcgcgtacc
gtgcaattgccttcaggcggtgccgtcgttatcgaccacaccgaggccctggttgccatt
gacgtgaactcggcccgctccacgcgtggtgccgacattgaagaaaccgccctgcgcacc
aaccaggaagccgccgacgaagtggcgcgccagttgcgtttgcgtgacctgggtggcctg
attgttatcgacttcatcgatatggaagacagcaagaaccagcgtgctgtcgaacaacgc
ctgcgtgatgccctgcacctggaccgcgcccgcgtccagatgggcaagatctcgcgcttt
ggtctgatggaactgtcccgtcagcgcctgcgccctgccctgaacgaaggctcccacatc
acttgcccacgatgcaccggcactggcgtcattcgcgatgccgaatccagcgccctgcac
gtgctgcgtctgctgcaagaagaagccatgaaagaaggcaccgccgccctgcacgctcag
gtgccggtggatgtggctaccttcttgctgaacgaaaaacgcgctgacatcaccaagatc
gaatcgcgcctgaacattgccctgatcctgattccgaacaagaatctggaaaccccgcac
cacatcatcgagcgcctgcgccacgacgacccccgtctggacgaactacgcagcagctac
gagctggttcagcagcctgagcagcaagacagcctggtgccgcaccgcagccacgaaatc
aagcctcgcccagaagccctggtcaagagcacgacaccagcccagcctgctcccatgagc
aagcccgctgccgccgcagccgccagcgccgctgccagcgacaacaagcccggcctgctc
aagcgtttgctgaactggttgtccggcgcaccggccgagcccgttgccgaaaccaccaaa
accgaaggcagcaaatcctcctccggtcgccgccagggccgcccaggccaatccaacggt
ggccgtggtcaaggtggacggggccgtcgccagtccaaccgcccggaagccgcccaggaa
gagaaagccagcccggaaagcaccggcggtaatacgcgcggtcgccgccgcaacgcctcg
gccggtaacgaatccgctctggaaaccgcacaaagccccagcgccaatgcaacgcccgct
acggccgacgaaggcagcagcaacagccgcaatccacgcaaccgtcgtggccgtggccgt
caacgccgcgaagaaggcagcgcagaaaatgtcgagctgaacaaagacgtcaatagcaca
gaagctcagccagaacaggctgctgccgctgttgccggcgtcgccgcagccgctgccgta
gccgccaccaagcaagaagcgcaaaaccgcgccgaacagctggctgagaccgacagcact
gataccagcgacaactcggatgccgaaaccgacgaaaacagcgagaacggcgctctggat
ccagaacgcaaacgtcgccgtcgtcgtagccgtcgtggtcgtcgcaacacggacgccaac
gccgtagccgagaacgaagagaacaacgaagaaggcaataccaacgcctacgttgctcac
gaaacgcctagcttcaaccccgctgccctggatgcccaggaacaagccgctgcccaaacc
gcagcagccgagcctgaacagcccaaagcagccgtagaggcaccagtagcccaagaggcc
actcctgtcgccgtagaggtcgctcaggaagccccagccgctaccgaagctgcccaacaa
gctgaagaagtcgccacgacccaagcagctgccgttgaaaccgctccagcccaggaagaa
gtagccgttcaggccgaagctgctccagaagctcctgccgcagaagaaaccgttgctcct
gtacaagcagaagccgctgccgaacctaccaaagcagaagtcattgaaactcaagctgaa
gccgtagaaacagccgcagctcctgcagaagctcagcccgcagctgaagccccagctgtt
gaagctgctccagtggaaactgcagctgtcgaaactgctgctgcccaggaagaaactgcc
ccagtcgccgaagttgctccagaaactccagcagccgaagaagccgttgctcctgcacaa
gcagaagccgctgccgaaccagtcaaagcagaagccgtagaagcgcaagccgaagccgta
gaaacagttgctactcctgcagaagctcagcccgcagctgaagcccctgccgttgaagcc
gctccagtagaaaccgcagctgtagagactcgcgtagagactcaagccgctgctgcacaa
gctcctgctaccgaacaagcacagaagcctgctgctgctcctctggaagccgtgctgaac
gccgctggcatcgaactggtggaaaccgctcgttcggcaacacaggacgactaccagccc
gcaccagtgcgcctgggtcgcccacgcaagcaacgtgttgcagaaaccgagaacagcgaa
ccgctgcaacaggtcgaaacgcagtaa
DBGET
integrated database retrieval system
