Alcaligenes faecalis ZD02: UZ73_03545
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Entry
UZ73_03545 CDS
T04157
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afa
Alcaligenes faecalis ZD02
Pathway
afa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UZ73_03545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afa03400
]
UZ73_03545
Enzymes [BR:
afa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UZ73_03545
DNA repair and recombination proteins [BR:
afa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UZ73_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
AAA_30
Cas3-like_C_2
HemY_N
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ALO40247
LinkDB
All DBs
Position
762980..766471
Genome browser
AA seq
1163 aa
AA seq
DB search
MTILMETEKQHSLSLPSTQDVLAALRPGQRYSQPMPPGSGDACLIADLARQHKAPILVLC
ADPLTAQRLAEEILLFGPALRVRQLPDWETLPYDSFSPHQDLISERLRTLHALTMHEVDV
LTVPVTTALYRLAPPSFLAAYTFSFRQGDELDEAQLRAQLMLANYTHMTQVSAPGEFSIR
GGLIDLFPMGSVLPYRLDLFDNEIESIRSFDIDTQRSLYPVKEIQLLPGREFPMDEEART
QFRARFREFFEGDPSRALPYKDVGNGIAFAGIEYYLPLFFEETATLMDYVPQGSLVITHG
DAQNAIGRFQSDTHSRFSFLKNDRERPILPPESLFLSDEQFFNGIKPFSRLSLNTQADDQ
PIAHPDFEALPVVAVNRRDKDPLAQLRQEVLDPKNRTVLCADSAGRRETLLQMLREHDLS
PAADCLNLADFLESDAAFALVVAPLSRGFALVHDSLSLLTENDLYPTQTRTQSSRRRNER
SSDVEAMVRDLSELREGDPVVHAEHGIGRYCGLKEMDLGEGPVEFLHLEYAKGSTLYVPV
AQLHVIARYSGADPEHAPLHQLGSGQWDKARRRAAKQARDSAAELLALYAQRAAREGFQF
KLPLNDYQAFSEGFGFEETPDQAAAIEAVVNDMTSGQPMDRLVCGDVGFGKTEVALRAAF
LAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPIRVAELSRFRSTKETQAAIAGLRDGS
VDIVIGTHKILSSDVRFKQLGLVIIDEEHRFGVRQKEALKQLRAEVDILTLTATPIPRTL
GMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQVYFLHNEVETIH
NRRARLEELVPEASIAVAHGQMPERELEAVMKGFYQKRYNVLLCTTIIETGIDVPTANTI
VIHRADRLGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGAGF
FLAMHDLEIRGAGEVLGESQSGDIQEVGYSMYADMLNTAVKALKAGEEPDLDSPFALQCE
VNLHTSALLPANYCPDVNARLGHYKALSHARTEDDLIHIHEELIDRYGLLPEAGENLLAV
HRLRIKAEPLGIVKIDASEAQATIQFSSKPNVDAVSIIELVQKNKQVRLAGPDKLKVEIT
KGEEIKNRIQAVRNVLNSLRKEK
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcctgatggaaaccgaaaaacagcactccctgtccctgcccagcacccaagat
gtgctggctgccttacgccccggtcaacgctactcgcaacccatgccccctggctcgggc
gatgcctgcctgattgccgacctggcccgccagcataaagcgcctattctggtgctctgc
gccgatcccttgactgcccaaaggctggccgaggaaatcctgttgtttggccccgccctg
cgcgtgcgccaactgccggactgggaaacgctgccctatgacagcttctctccccaccag
gatctgatctccgagcgcctgcgcaccttgcatgcgctgaccatgcacgaggtcgatgtg
ctgacagtacccgtcaccacggccctgtatcgtctggcgccgccttcttttctggccgcc
tacaccttctccttccgtcagggcgacgaactggatgaagcgcagttgcgcgcccagttg
atgctggcaaactacacccatatgacacaggtcagcgccccgggtgagttcagcattcgc
ggtggcctgattgacctgttccctatgggttcagtgctgccctaccgtctggacctgttc
gacaacgagatcgaaagcatacgcagcttcgatatcgacacccagcgcagcctgtatccg
gtcaaggaaatccagctgttgcccggccgtgaattccccatggacgaagaggcgcgcacg
caattccgggcgcgtttccgcgagttctttgagggcgatccgtcacgtgccctgccctat
aaagatgtaggcaatggcattgcctttgccggtattgaatactatctgccgctgttcttt
gaagaaacggccaccttgatggactatgtgccgcaaggcagtctggtcattactcacggg
gatgcacaaaacgcgatcggccgcttccagagcgacacccatagccgtttttctttcctg
aagaacgaccgtgaacgcccgattctgccgccggaaagcctgtttctgtcagacgagcag
ttcttcaatggcatcaaaccctttagccgtctgagtctgaacacgcaagctgatgatcag
cctatcgcccacccggactttgaggctttacctgtggtggcggttaaccgacgcgacaag
gaccctttagctcaattacggcaagaagtactggacccgaaaaaccgaacggtattatgt
gccgattcggcgggccgtcgggaaactctgctgcaaatgctgcgtgagcacgatttgtcg
cccgcggcagattgcctgaatctggccgactttctggagtcagacgccgcctttgccctg
gtcgtcgcccccctgtcacgtggttttgcgctggtgcacgacagcctgagcctgctgact
gaaaacgacctctatcccacccagacacgcacccaaagcagccgtcgccgcaacgagcgc
agcagcgatgtggaagccatggtgcgggatctgtccgaattgcgcgagggcgaccccgtg
gttcacgccgagcacgggattggtcgctactgcggtctgaaagaaatggacctgggcgaa
ggcccggtcgagttcctgcacctggaatacgccaagggcagcaccttgtatgtgcccgtg
gcccagttgcacgtaatcgcccgttacagcggtgccgaccccgagcatgcgcctttgcac
caactgggctctggccaatgggataaagcccgccgtcgtgcagccaagcaagcacgtgac
agcgcggctgaactgctggctctctacgcccagcgcgccgctcgtgaaggcttccagttc
aagctgcctctgaatgactatcaagccttttccgagggtttcggctttgaggagactccg
gatcaggccgcagccattgaggccgttgtgaacgatatgacgtcgggccagcctatggat
cgtctggtctgcggggatgtaggctttgggaaaaccgaagtcgccctgcgtgccgccttc
ctggccgtagccaatggcaagcaagttgccttgttgtgcccgaccaccttgctggctgag
caacatgcgcagaccttctcggaccgttttgccgactggcctatccgtgttgccgagctg
tcccgcttccgctcgaccaaggaaacccaggctgcgattgcaggcctgcgcgacggcagc
gtggatattgtgattggtacgcacaagatcctgtcctcggatgtgcgtttcaaacaactg
ggcctggtcatcatcgacgaggaacaccgctttggtgtgcgccagaaagaagccttgaag
caactgcgtgccgaagtcgatatcctgaccctaaccgccactcctattccacgtaccttg
ggcatgtccctggaaggcatacgggacttttccgtgattgccacggcaccacaaaaacgt
ctggcgatcaaaacctttgtacgccgggaagatggcagcaccatacgagaagcgctgctg
cgcgaattgaaacgcggtggccaggtctacttcctgcacaacgaagtcgaaaccattcac
aaccggcgtgcccgtctggaagagctggtgccggaagccagtattgccgtggctcacggt
caaatgcccgagcgtgagctggaagccgtcatgaagggcttctaccagaagcgctacaac
gtgctgctgtgtaccacgattattgaaaccggcattgacgtgcctacggccaataccatc
gtcattcaccgtgcggatcgcctgggtctggctcagctccaccaattgcgtggacgagta
ggacgctctcaccaccaggcctatgcctatctgctgacccctggcgaggatgccatcacc
agcaatgcgaagaagcggctggaggccattcaggccatggaagagctgggtgcaggcttt
ttcctggccatgcacgatctggaaattcggggcgccggggaagtgctgggcgaatcccag
tccggcgacattcaggaagtgggctattccatgtatgcggatatgctcaataccgctgtc
aaagccctgaaagccggtgaagaacctgacctggattcgccctttgccttgcagtgcgaa
gtgaatctgcacacctccgccctgcttccggccaactactgtccggatgtgaacgcccgt
ctgggacactacaaggctctgtcacacgcccgtacggaagacgatctgatccatatccat
gaggaactgattgaccgctacggcctgctgccagaggcgggcgagaatctgctggccgtg
catcgcctgcgcatcaaggctgagcccttggggattgtgaaaatcgatgccagcgaagcc
caggcgacgattcagttttcttccaagcccaatgtggacgccgtcagcattattgaactg
gtccaaaagaacaagcaggtacgcctggctgggccggacaagctcaaggttgaaattacc
aaaggcgaagaaatcaagaaccgtattcaggccgtgcgcaatgtcttgaacagcttgcgc
aaagagaagtaa
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