Alcaligenes faecalis ZD02: UZ73_09780
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Entry
UZ73_09780 CDS
T04157
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
afa
Alcaligenes faecalis ZD02
Brite
KEGG Orthology (KO) [BR:
afa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afa03016
]
UZ73_09780
Enzymes [BR:
afa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
UZ73_09780
Transfer RNA biogenesis [BR:
afa03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
UZ73_09780
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ALO38522
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All DBs
Position
complement(2156611..2157210)
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AA seq
199 aa
AA seq
DB search
MTIPLPILDLQQSGAEHSFRAFIGWWPDAQTRAWLAEQAQHAQAMYGGRMMQPDHFHLTL
AFLDGSRVSDLRTLATQMAQWAVPPITLDLTIRDVFEKPQVVWAGPDESQTQALAALQQW
HDEIWAKLTALGWTQPPRRFRPHVSLLRHARITADQPHCHPLPGQPFVGDGVGLIVSVPG
EQRSQYHLAAMMKPERTGA
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgacgattcccttgcccattctggacctgcagcagtcaggtgccgaacactcttttcgt
gcgttcatcggctggtggccagacgcacaaacccgcgcctggctggcggagcaggcgcag
cacgcacaggcgatgtatggcggtcggatgatgcagcctgatcactttcacttaaccctg
gcgtttctggatggcagccgcgtgtctgacttgcggaccttggcgacgcagatggcgcaa
tgggcagtgccgccgatcacgctggacctgacgatacgggatgtgttcgagaagcctcag
gtggtgtgggccgggccggacgagtcgcaaacccaagcactggcggccttgcagcagtgg
catgacgagatttgggccaagctgacggccctgggctggacgcagccaccgcgtcgtttt
cgcccgcatgtgtccttgctgcgccatgcacggatcactgccgatcaaccacattgccat
cctttgcctgggcagccgtttgtaggtgatggcgtgggcctgatcgtttccgtccccggt
gagcagcgtagtcaatatcatctggccgccatgatgaagcctgaaaggacaggtgcatga
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