Alcaligenes faecalis ZD02: UZ73_09830
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Entry
UZ73_09830 CDS
T04157
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afa
Alcaligenes faecalis ZD02
Pathway
afa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UZ73_09830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afa03019
]
UZ73_09830
Enzymes [BR:
afa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UZ73_09830
Messenger RNA biogenesis [BR:
afa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UZ73_09830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALO38530
UniProt:
A0A0A2NBN4
LinkDB
All DBs
Position
2166276..2167739
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AA seq
487 aa
AA seq
DB search
MDSQITFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFT
LPILHRLLNNPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNIN
PQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKIISL
MPVDRQTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQVILADQAHKRDLL
SHIIRESGWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKV
VVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRL
LKQIERMTRNPIERIVVEGWTPPSRAALAEEAKEDTYAERRFNSAPGARAPGARRPNGGG
QGRSAEGRGGNGESRPRRPGNDNRPRRSAAPGGAGGGAARAGQGRPGGRQDSRGPNRSNR
SSAQAKA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttggactctcaaatcacttttgcctctcttgagctggcagaacctctgttgcgtgctgta
accgacgcaggctatacccaccccacccctattcaagcccaggccatccccaaggtcatt
gaaggtggcgacctgttggctgccgctcaaaccggcactggcaagaccgcaggctttacc
ctgcctatcttgcaccgtctgctgaacaaccctcagcaaaaccgcaaaccaggccgccca
cgtgcgctgatcctggcccctacccgtgaactggccgcccaggttgaagaatcggtacgt
ttgtacagccagcacacccgtctgcgctcgatggtcatgtttggtggcgtgaacatcaac
ccccagttccatgcgctgcgcaagcccctggacattctggtcgccactcccggccgtttg
ctggaccacgtgcgtcaacgtacggtggacctgaccggcgtggaaatcctggtcctggac
gaagccgaccgcatgctggacatgggctttatccgcgacatccgcaagatcatcagcctg
atgccggttgatcgtcagactctgctgttctcggcaactttctcggacgaaatccgtgaa
ctggcccgtggttcgctgaacaaccctgacgaagtggccgttgctgcccgcaacaccacc
aacgaactgattacccagcaagtgattctggctgaccaggcacacaagcgtgacctgctg
agccacatcatccgcgaaagcggctggaaccaggttctggtgttctgccgcaccaagcac
ggcgccaaccgcttggccgaaaaactgtccaaggacggtatggccgctgaagccctgcac
ggcaacaagagccaggcggctcgtacccgtgcgctggctggcttcaagaacggcaaggtt
gtggtgctggttgctactgacatcgccgctcgtggtctggacattgatcaactgccttac
gtggtcaacttcgaactgcctaacgttcctgaagactacgttcaccgcattggccgtact
ggccgtgccggtagcgaaggcgtggccctgtcgctggtcgatcgcagcgaaatgcgtttg
ctcaagcagatcgagcgcatgacccgcaatcctatcgagcgcatcgtggtggaaggctgg
acgcctccttcgcgcgctgctctggctgaagaagccaaggaagacacctacgcagagcgc
cgcttcaacagcgctcctggcgctcgtgctcctggtgcccgtcgccccaacggtggtggc
caaggtcgctccgctgaaggccgtggtggcaatggcgagagccgtccacgccgtcctggc
aacgacaaccgcccacgtcgcagcgccgctcctggcggtgcaggtggtggcgcagcccgt
gctggccaaggtcgccccggtggccgtcaggacagccgcggcccgaaccgcagcaaccgc
agttctgcccaagccaaagcctaa
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