Anoplopoma fimbria (sablefish): 129088989
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Entry
129088989 CDS
T09102
Symbol
vcpip1
Name
(RefSeq) LOW QUALITY PROTEIN: deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
afb01002
]
129088989 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129088989 (vcpip1)
Enzymes [BR:
afb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
129088989 (vcpip1)
Peptidases and inhibitors [BR:
afb01002
]
Cysteine peptidases
Family C64
129088989 (vcpip1)
Ubiquitin system [BR:
afb04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
129088989 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
DUF5817
Motif
Other DBs
NCBI-GeneID:
129088989
NCBI-ProteinID:
XP_054452264
LinkDB
All DBs
Position
3:complement(4114290..4125314)
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AA seq
1165 aa
AA seq
DB search
MSLLQSSKKKDKRVLSGTCPDPRCQARLFFPAHGSVSIECTECGQRHEQRNLTSVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPVLTRYGMDKQTGKAKLLR
DMNQGEMFDCSLLGDRAFLIEPDHVSTMGYGKDRSGSLVYLHDTLEEVKKANGDGECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQNFKQNLDCYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVAEE
QCRGKDGKLNKPICIAWSSSGRNHYIPLVGIKNTVLPTLPARLLPKAWGVPQELIRKYIK
LEPDGSCVIGGDRSLQDKYLMRLVNAMEEVFMEKHSIHPSLVADVHQYVYRRTGVIGIQP
EEVTEAAKKSVTENRLHRCLICGALSELHVPPEWLVPGGKLYNLAKSTHGHLRPDKNYSF
PLNNVVCSYDPIMDILTPDYKLSSLNTCNWCHGTSVRHIRGNGVVVYLDGDRTNTRSQGG
KCGCGFKHFWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYETEPALNSNVYDVAMKLV
TKHFPGEFGSEILVQKVVNTILHHTAKKNPDEYNPVSIAGAHAQRLTDGVETAPDSQPPT
KIILTGQKTKTIHKEELTMSRAERSIQQSISEQALVSQKRRTDKLKQEQKVRTSSAAGST
ETSLSSSAPATPTKSSTPPSNKEKKIRVTTSDGRQAMLTLQVNTTFSELQRSIAAQFGVP
PAQQCIRHGFPPKELPPPKDGEENEPAALQHGDRVTVEILRAPEDKGPVAAVPKASGSHA
AALHAAKSEDAVTSGRTGGRELQDSIDLEMSSLCLLATLMGEDVWSYAKKLPHLFQQGGV
FYNIVKKDMGLMDGKHCTLPHLTGKTFVYNAADERLELCVDAAGHFPVGPDVEDLVKEAL
VQLRSETATRGSREGSPSHGVLRLGSGGVVRKKEQLQSVTAFQGKGHSLGSAGGSSPPEH
RPITRQHSSGVDLSASVSRARRTCRTSEDATRELVRMAPGFVTTKDGRGLDPDLMEQQRR
KLQEMVSSIQASMERHLREQQSAGAAGGGTKAGASQPTPTLDDERPAAAGAATGAGKPDK
KTEEPEEMESQDGEQSAATEPMDHS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgctgcagagctccaagaagaaggacaaacgcgtgctctccggtacctgtccg
gaccccaggtgtcaggcgcggctgttcttccccgcgcacggctccgtcagcatcgagtgc
acggagtgcggccagcggcacgagcagaggaacctgaccagcgtggaggaggtgacggac
ccggatgtggttctgcacaacctgctcaggaacgccctgctgggggtcaccggggccccc
aagaaaggcacggagctggtgaaggtgatggggctgtccaactaccactgcaagctgctg
tccccggtgctgacccggtacggcatggacaagcagaccgggaaggccaagctcctgagg
gacatgaaccaaggcgagatgttcgactgctccctcctgggggaccgggccttcctgatc
gagccggaccacgtgtccaccatgggttacgggaaggaccggtccgggagcctcgtctac
ctccacgacaccctggaggaggtgaagaaggccaacggcgacggggagtgtttgattccg
gtccacgtggacggagacgggcactgcctggtccacgccgtgtccagggcgctggtgggc
cgggagctgttctggcacgccctgagggagaacctgaagcagaacttcaagcagaacctg
gactgctacaaggcgctctttcaggatttcatcgacgcggcggagtgggaggacatcatc
aacgagtgcgaccccctcttcatcccgccagagggcgtcccgctcgggctgcgcaacatc
cacatattcggtttagccaacgtcctgcaccgacccattatcctgctggactccctgagc
gggatgaggagctccggggattactcggccaccttcctgccaggtctggtggccgaggag
cagtgccgggggaaagacgggaagctcaacaaacccatctgcatcgcgtggagcagctcg
ggacggaaccactacatccccctggtgggaatcaagaacacggtgctgcccacgctgccg
gcccgcctgctgccgaaggcctggggcgttccgcaggagctcatcaggaagtacatcaag
ctggaaccggacgggagctgcgtgatcggcggcgaccgcagcttgcaggacaaatacctg
atgcggctggtcaacgccatggaggaggtgttcatggagaagcacagcatccacccgtcg
ctggtggccgacgtgcaccagtacgtctacaggcgcaccggcgtgatcggcatccagccc
gaggaggtgaccgaggcggcgaagaagtcggtgacggagaaccggctgcaccgctgcctg
atctgtggcgctctctccgagctccacgtcccgccggagtggctggttcccggcgggaag
ctctacaacttggccaaatccacccacggccatctgcggccggacaagaactacagcttc
cccctcaacaacgtggtctgctcctacgaccccatcatggacatcctcaccccggattat
aaactcagctccctcaacacctgcaactggtgtcacggcacgtcggtgcgccacatccgc
ggcaacggggtggtggtgtacctggacggggatcggaccaacacccgctcccagggcggg
aagtgcgggtgcggcttcaagcacttctgggaggggaaggagtacgacaacctcccggag
gccttccccatcacgctggagtggggggggcgggtggtgagggagacggtgtactggttc
cagtacgagaccgagccggctttgaacagcaacgtgtacgacgtggccatgaagctggtc
accaagcacttcccgggggagttcggcagcgagatcctggtgcagaaggtggtgaacacc
atcctgcatcacaccgccaagaagaacccggacgagtacaacccggtgtccatcgccggg
gcccacgcccagcgtctcaccgacggcgtggagacggcgccggactcccagccgcccacc
aagatcatcctgaccgggcagaagacgaagacaatccacaaggaggagctgacgatgagc
cgggcggagcgcagcatccagcagagcatcagcgagcaggccctcgtcagccagaagagg
cggaccgacaagctgaagcaggagcagaaggtccggacgtcctccgccgccgggtcaacg
gaaacctccttgtcctcctccgctccggccacgcccaccaaatcctccaccccgccgtcc
aataaggagaagaagatccgcgttaccaccagcgacggcaggcaggccatgctgaccctg
caggtcaacacgaccttctcggagctgcagaggagcatcgccgcccagtttggcgtgccg
ccggcgcagcagtgcatccgccacggcttcccgcccaaagagctgccccctccgaaggac
ggcgaggagaacgagccggcggcgctgcagcacggcgaccgggtgacggtggagatactg
agggcgcctgaggacaagggccccgttgccgccgtgcccaaagcgtccgggtcgcacgcc
gccgccctgcacgcggcaaagagcgaggacgccgtgacgtcaggcaggacgggcggccgc
gaactccaggacagcatcgaccttgagatgtcctcgctctgtctcctagcaaccttgatg
ggtgaggacgtttggtcgtacgcaaagaagctgcctcacttattccagcagggaggcgtc
ttctacaacatcgtgaagaaggacatgggcctgatggacgggaagcactgcacgctgcct
cacctgacggggaaaacctttgtttacaacgcagcggatgaacgtctggagctctgcgtg
gacgccgccggccacttccccgtcggccccgacgtggaggatctggtgaaggaggcgttg
gtccagctgcgctccgagacggccaccaggggcagcagagagggcagcccctcccacggc
gttctgcgcctcggcagcggcggcgtcgtccgaaagaaggagcagctgcagagcgtcacc
gccttccagggcaaaggccactctctgggcagcgccgggggctcctcccctccggagcac
cggcctatcacgcgccagcacagcagcggcgtggacctgagcgccagcgtgtcccgggcc
cgccggacctgtcggacatccgaggacgccaccagggagctggtccgcatggctccgggc
ttcgtcaccaccaaggacggccgcggcctggaccccgacctgatggagcagcagcggagg
aagctgcaggagatggtctcctccatccaggcctccatggagcgccacctgagggagcag
cagagcgccggcgctgcagggggcgggactaaagcgggagcgagccaaccgacgcccacg
ctggacgacgagcgtccggctgcggcgggcgcggcgacgggggccggcaaaccggacaag
aagacggaggagccggaggagatggagagtcaggacggcgagcaaagcgccgccaccgaa
cccatggatcactcctga
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