Anoplopoma fimbria (sablefish): 129089106
Help
Entry
129089106 CDS
T09102
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog isoform X1
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03030
DNA replication
afb03410
Base excision repair
afb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129089106 (zgc:110269)
03410 Base excision repair
129089106 (zgc:110269)
03450 Non-homologous end-joining
129089106 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129089106 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129089106 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129089106 (zgc:110269)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129089106 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129089106 (zgc:110269)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129089106 (zgc:110269)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129089106 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
HHH_5
XPG_I_2
Motif
Other DBs
NCBI-GeneID:
129089106
NCBI-ProteinID:
XP_054452433
LinkDB
All DBs
Position
3:complement(22563454..22568654)
Genome browser
AA seq
348 aa
AA seq
DB search
MGITKLADLIRSDAPDAISHKDISDYTGKVIALDTSVVVNQFRAATPSLSPLTGLFFRTL
TFLEHDIKPVFVFDGKPPEEKTAVLQKRAETAGWRSANLTGAASSQTKDCLQLLKLLGVP
VIQAPGDAEALCAQLVREGTVDAVASEDMDTLPFGANILIRQLNAKKDSEVVEYSLTKLL
EKLKMNQEEFVDLCILLGCDYCDKIAGLGPKRALALIQKHHTIEKVVLEINRKTYPVPHF
WRYKEARKIFLDAPQTEAPELTWTEPDEEALVRLLCHVKYVKEDRVRHRMEKFRQTRESK
REERERERAEGHNRQTCIKDFFRVTRKREQPMEAADPLINNRKRPKSK
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaccaagctggccgatctgatccgctctgatgctccggatgctatttctcac
aaggacatcagtgactacacgggaaaagtaatcgcactggacacctctgttgtcgtgaac
cagttccgtgctgcgacaccttcactaagcccactgacaggtctcttcttccgcacgctc
accttcctggaacatgacataaagccagtctttgtgtttgatgggaagcctccagaggaa
aagacagctgtgctccagaagcgagctgagaccgctggttggaggtcagccaacctcact
ggcgcagcatcatcccagaccaaagactgtctccagctcctgaagcttctgggtgtacct
gtcatccaggctccaggggatgctgaagcgctgtgcgcccagctggtgagagaggggact
gtggacgctgtggcgtcagaggacatggacacactgccatttggagccaatattctcatt
cgccagctaaacgccaagaaggacagtgaagttgttgaatattctttaaccaagctgtta
gagaaactcaaaatgaatcaagaggagtttgttgacctgtgcattttgttgggctgcgac
tactgtgacaagatagccggtttgggtccaaagagagctctggcattgatccagaagcac
catactattgagaaagttgttttggagatcaacagaaagacctatcctgtgccacatttc
tggaggtacaaagaagcccgtaagatattcttggatgcgccacaaacagaagctcctgaa
ctcacctggactgagccggatgaagaagccttggttcggctcctctgtcacgtcaaatat
gttaaggaggacagagtccgtcatcgaatggagaagttccgtcagacgcgggaaagtaag
cgggaggagagggaaagggagagggcagaagggcataacaggcagacttgcataaaggac
ttctttagagttacaaggaagagggaacagcccatggaagctgcagaccctttaatcaac
aacaggaagagaccaaagtcaaaataa
DBGET
integrated database retrieval system
