KEGG   Anoplopoma fimbria (sablefish): 129089131
Entry
129089131         CDS       T09102                                 
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding protein MEX3B-like
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
afb  Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:afb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afb03019]
    129089131
   04121 Ubiquitin system [BR:afb04121]
    129089131
Enzymes [BR:afb01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     129089131
Messenger RNA biogenesis [BR:afb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     129089131
Ubiquitin system [BR:afb04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    129089131
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-RING_2 KH_BICC1_1st zf-C3HC4 KH_2 RING_XB3-XBAT31 KH_DEAH11_2nd Prok-RING_4 zf-RING_5 CR_prot_dom_plant
Other DBs
NCBI-GeneID: 129089131
NCBI-ProteinID: XP_054452474
LinkDB
Position
3:complement(24548687..24556570)
AA seq 650 aa
MPSPLFHPEIMDHDVVISSQHNGVGLPRETDQDSREEDHQEALRFALDQLSLMALDKVVD
PLDGSQCPGSEGCNGGGYVDLQMLEHPNGSRDSPTSCSPSPEYYGSGGYHMAGSHPMLHG
EQSVLCSRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFI
VTGRREDVEMAKREIVSAAEHFSMIRASRCKAGGPGGGGAGAGAGTGGSSLPGPPHLPGQ
TTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREKDPVFEVTGMPENVDRAREE
IETHITLRTGTFVDLQGDNDFHSNGTDVSLEGLGALNGGLGSSLWSRASGHHSAPPPPPP
SPPPPIPMSMHHSSNRKMSSSVTYHTHNGGMSSDNFSTARKANEGGSPTSPFSTGSSSAG
GGFTFGGDSTPGLPSSEELGFEFSAANIWAPFANGGSGNKTAGSSQQQQPLRRNSSGLSG
GAITPRLSPTLPQDTGVGPMDHPLARRAQSDPLSTLSWLQSGNAGGGSFSGASSSSSGGS
STGYSSCSASSLPGGSPTDSEGGSGGVGLSSGMLSRLKGGSGPGVPGLVGVSPGINRDCF
VCFESEVTAALVPCGHNLFCMECAGQICQSADPECPVCHTPTTQCIRIFS
NT seq 1953 nt   +upstreamnt  +downstreamnt
atgcctagccctttattccaccccgagattatggaccacgacgtggtcatcagcagccag
cacaacggggtcggtctaccccgagagacggaccaggactcccgggaagaggaccaccaa
gaggcgctccgcttcgccctggaccagctgtcactcatggccctggacaaggtggtggac
cctctggatgggtcccagtgtcccggttccgagggctgcaacggaggaggatacgtggat
ctacagatgctggagcaccccaatgggtccagggactctcccacgtcttgttctccatcc
ccggagtactacgggtcgggtgggtaccacatggctggatcgcatcccatgctccatgga
gaacaaagcgtcctctgcagcaggaagagaagtgtcaacatgaccgagtgtgtgccagtc
cccagctccgagcatgtggccgaaatagtaggcagacaaggttgtaagattaaggccttg
cgtgccaaaacaaacacctatataaagactccagtcagaggggaggagccagtgttcatc
gtaacgggacgtagggaagatgtggagatggccaagcgtgaaattgtctctgcagctgag
catttctctatgatccgagcgtcccgctgcaaagctggagggcctggaggaggcggagca
ggagcgggagcgggaacaggcggcagctctcttcctggaccaccacacttacctggacag
accactatacaggtgagggttccctaccgagtagttggtttagttgttggaccgaaagga
gcaactataaagcgcatccagcagcaaactcacacctacatcgtgacacctagtagagag
aaagacccggtgttcgaggtgaccggcatgccggaaaacgttgaccgagcgagagaggag
atcgagacccacatcaccctgcgaacgggaacctttgtagacctgcagggagacaatgac
ttccactccaacggcactgatgtcagtctagaaggcctgggcgccctgaacggaggactg
gggtcgtctctgtggtccagggcttctggccaccattctgccccccctcctcctccaccc
tcccctcctcctcctattcccatgtccatgcatcactcatctaaccggaagatgtcgtcc
tcggtaacctatcacacgcacaacggcgggatgagctcagacaacttcagcaccgctcgc
aaggccaacgagggaggcagccccacaagccctttcagcacaggctccagcagtgctgga
ggaggattcaccttcgggggcgactccaccccagggctgccctcctcagaagaactgggc
tttgagttcagtgccgccaacatctgggcacctttcgccaacggtggctcaggcaataag
acggccggctcctctcagcagcagcagcctctacgtcgcaacagcagcggcctcagtggc
ggcgccatcactcctcgattgtctccaactctgcctcaggacacgggcgtgggccccatg
gatcatccgttggcccgtcgtgcacagagcgaccccctcagcactctctcctggttgcag
tctggcaatgcaggaggcggctccttctccggagcgtcaagctccagctccggcggttcg
tcgaccggttactcctcttgctcagcctcctccctgcccggcggctcacccactgactcc
gagggaggtagcggcggcgtgggcctcagctctgggatgctgagtcggctgaaaggaggc
tctggccccggggtcccgggtcttgtcggagtgagccccgggatcaacagggactgcttt
gtgtgttttgagagcgaggtgacagcagccctggtgccttgtggccacaacctgttctgc
atggagtgcgctgggcaaatctgccagtcagccgacccagagtgccccgtctgccacacc
cccactacacagtgcatccgcatcttctcctaa

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