KEGG   Anoplopoma fimbria (sablefish): 129089317
Entry
129089317         CDS       T09102                                 
Name
(RefSeq) collagen alpha-1(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04382  Cornified envelope formation
afb04510  Focal adhesion
afb04512  ECM-receptor interaction
afb04518  Integrin signaling
afb04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129089317
   04518 Integrin signaling
    129089317
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129089317
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129089317
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    129089317
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129089317
   00536 Glycosaminoglycan binding proteins [BR:afb00536]
    129089317
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   129089317
Glycosaminoglycan binding proteins [BR:afb00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129089317
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 129089317
NCBI-ProteinID: XP_054452703
LinkDB
Position
3
AA seq 881 aa
MGSSVTVATLCSLWWIFVLVVFVQQLNAAGIEGPCQGRGCSVCQCLPAKGTRGTPGKPGQ
QGLRGLMGPGGREGSLGQKGRRGAEGSHGPEGPKGDRGKTGVPGFPGNDGSPGHPGAGGE
PGLPGLDGCNGTRGRPGVLGIPGLDGLHGSLGLQGPKGIKGERLYGAPLPGLPGDPGRDG
QRGFPGIQGVIGPKGNRGPPGPLGPQGWEGPNGVRGLPGDPGESLAGVKGDDGDQGPPGP
QGPEEVKEFPPDYLPPKGYKGDQGLLGPCGPKGISGGRGDVYIQEIKGEQGIVGFPGVRG
LPGYPGRDGPLGPQGLHGEKGYPGLIGRNGPKGYPGDPGLPGPLNNGSYARGVKGDRGYP
GTPGLPGDPGFMGMHGPPGPPGLTIPEGPGLPGPRGFHGPKGYKGEPGGYNNFENLIPGL
KGTKGLLGPKGVTGPPGPPDYYCEPGYPGDHGDIGHKGSPGNKGVKGIKGCPGECQCISA
GVSEGPPGPVGYPGPPGLPGTQGIKGKPGLKGYEGLRGTQGFQGNHGIKGQKGQKGHSFV
VDIKGAKGNQGVPGHTGPPGAAGSPGLDGHPGPSGDHGTPGAGYSGLPGPKGYPGVVGPK
GFPGLVGPPGPGFPGPNGHPGTKGYQGLTGPSGIPGRPGPPGETEECCYEREIGLPGPKG
KGGSPGIPGEPGRDGLPGTVGLLGPKGMEGDDSETEGIGLQGLPGLNGDPGDPGPSGISL
DGPSGLPGLPGLLGRKGDPGDVLSARPGAIGPPGRPGARGKSGLSGIPGNPGSPGAQGQP
GRPGWKGEPGANGDLGVTGPPGPPCTVCELIGSPGPSGPPGNPGQRGLPGYSGQKGLMGD
IGPPGYGHKGPQGFPGPPGLPGPAGPRGSAGPSGDPGTDGW
NT seq 2646 nt   +upstreamnt  +downstreamnt
atgggatcctcagttactgttgcaactctgtgctctctctggtggatctttgtcctggtg
gtctttgtgcagcagctcaatgcagcggggattgaaggcccatgtcaaggcagaggctgc
tctgtatgtcagtgtcttcctgctaaaggcacacggggaactccagggaagccaggccaa
caaggcctccggggactaatgggaccagggggacgtgaagggtcacttggacagaagggc
agaaggggagcagagggatcacatggcccagaggggcccaaaggagaccgcggcaagact
ggtgttcctggttttcctggaaatgatggctcaccaggccaccctggagcaggcggtgaa
cctggtttgccaggattggatggctgtaatgggacaaggggtcgacccggagtccttggt
attcctggtttggatggtctccatgggtcgctgggattacaaggacctaaaggaattaaa
ggagaacgattgtatggtgctcccctgccagggcttccgggagatccgggtagagatgga
cagcgcggttttcctggaatacaaggagtcattgggcctaaaggcaacaggggccctcct
ggtcctcttggacctcagggctgggaaggacctaatggagttagaggactaccaggcgac
cctggagaatcactggcaggagttaaaggggacgatggtgatcaaggcccacctggccca
caaggaccagaagaagtcaaagaatttcccccagactaccttccacccaaaggctacaag
ggagaccaaggtcttcttggaccatgtggaccaaagggcataagcggtggtagaggagac
gtatacattcaagaaataaaaggagagcaaggaatcgttggttttcctggagttagggga
cttccaggatatcctggtagagatggacctttaggacctcagggtttgcatggagagaaa
ggatatccaggtctcattggaagaaatggaccaaagggttacccaggagatccaggtctc
cctggtcccctgaacaatggaagttatgccagaggtgttaaaggtgacagagggtatcct
ggaacgcctggactcccaggtgatcctgggttcatgggcatgcatggacctcctggccca
ccagggttaacaataccagaagggccgggtctgcctggtccacgagggttccatggtccg
aagggctataaaggagagccaggggggtataacaactttgaaaatctgattccgggtcta
aagggaactaaaggactcctcggacctaaaggtgtcacaggccccccaggtcctccagat
tactactgtgagcccggttaccctggagaccatggtgacataggacacaaaggatctcct
ggaaacaaaggggtcaagggaattaaaggttgtccaggggaatgtcagtgtatatctgca
ggggtgagcgaaggcccccctggtccagttggttatccaggacctccagggttaccagga
actcaaggaattaaaggaaaaccagggctgaaaggatacgagggtctaagaggaacacaa
ggctttcaaggaaatcatggtataaaaggacaaaagggtcaaaaaggtcactcttttgtg
gtagatatcaaaggtgccaagggtaaccaaggagtccccggacatactggtcctcctgga
gcagcaggtagtccaggactggatggccaccctgggccttcaggggaccatggaacaccg
ggggctggatattcaggattacctggtcccaaaggttaccctggtgttgttggaccaaaa
gggtttccagggcttgtaggccccccaggtcctggttttccaggccccaatgggcatcct
ggaaccaaaggttatcagggactaactggcccctcaggaattcctggccgaccaggccct
ccaggtgaaactgaggagtgctgttatgaaagagagattggattacctggtccgaagggt
aagggaggctcaccggggattccaggtgagccaggaagagatggtcttccgggaactgtg
ggactcctaggcccgaaaggcatggaaggagatgacagtgaaactgaagggattggactg
caaggacttccaggtttaaatggggatccaggcgaccctggtcccagtggaattagcctg
gatggcccttcaggccttcctggattaccaggacttcttggcaggaagggcgacccagga
gatgtcctctctgccaggccgggtgctattggcccacccggccgccctggggctcgcggg
aaaagcggactaagtggaattcctggaaacccagggtctccaggcgcacaaggccaacct
ggacgacctggttggaaaggagagccaggagccaatggtgacctaggagtcactggtcct
ccaggcccaccgtgcactgtttgtgaactgattggatctccaggcccttcaggacctcca
ggaaaccctggacaaaggggactaccaggctactctggtcagaagggtttaatgggagat
ataggtccacctggttatggacacaagggtccacaaggtttccctggcccacctggtttg
ccaggcccagcaggaccaagaggctccgctggcccctcaggagatcctgggaccgatggc
tggtga

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