Anoplopoma fimbria (sablefish): 129089372
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Entry
129089372 CDS
T09102
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129089372 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
129089372 (acin1a)
03015 mRNA surveillance pathway
129089372 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129089372 (acin1a)
03041 Spliceosome [BR:
afb03041
]
129089372 (acin1a)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129089372 (acin1a)
Spliceosome [BR:
afb03041
]
Complex C
Other components
EJC/TREX
129089372 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
RRM_1
HeH
Motif
Other DBs
NCBI-GeneID:
129089372
NCBI-ProteinID:
XP_054452765
LinkDB
All DBs
Position
3:14893362..14908378
Genome browser
AA seq
1695 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNEQEDHTEVNNSTSCP
PQAQDATPALAEQHKPPGPSGVDGLFGAVNEGEGNRNQDADMSGPPASGSMAMRVPAGEQ
RPEKGSASNQAAADSDDDDSEDGDEDGEDEDWESGARRRSNREPARAPTTRERSGASCQP
PQQHMPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARRSSSTSSSGSSSS
GSRSSSPEPQRSGHAERKPGPLTLLARKMESEGAFSGAGWHRPGVEGEKQDGSSLAALFP
GRGPQEGLVSAITHTANAAGHASFPTVPGINQGIIGAHSAHIQLPFGVLKATATEERDSE
MERERALDLERQEKQRKLEQERAMEVERERALALEREERERALERERIERQQALEREEQE
KALQRERELALERERHQRELALAKEREELEQAIAQERARERQREIERQREIERQRALEQE
RLERERREREEMERAMALEQERRERERALEQEMLQRERALEAERIEREKALEQERFERER
LERHRALEQERLEREKALEQERLEMERALERERLERERALERERLEREKALEKQRLEREK
VLEQERIERERALEQERLKQERALEQQRLELERKEKERIEREKALEQERIEKEKAFERER
EEKERVEREAALEEERKEKERAEKERKERLEREKALEQENIERERALEKERALEHERLEK
EKAMQKEKKEQERALEQEKERARMAEKERESHLPPSKRGREIGLTPLPTPPPLSTAPDRK
SSTETEEQGDDHASKPQGESAESMSPTPPMPQSSFKKFRFLRDTPIHVQSSSPSMVIKRP
RNFSDTPQPWASAVSSLTDVGERQEEGLQPSAEQEDPQKGTKQEVVARAPGSMGAVPEKE
TSLGTTLVPSPKKEKAISSVSEDKEKESTKKVDDESRPTHPLDAAQRRGRDTKKEAKQAR
RRSSSNDSSSSESDSGSSSSGSSGSSSSSQEKTRSTTRGRKDGKPDRDTSPQHRMTLEAK
AEGLKEAQKASPSKREMSVEKSNTAADEDTRTKKMFMEAPTREESQRKRKDNEGEEETDK
ERQVKESAMAEPEKHPETSEETPKAFSARKISISSSKSSPGTGSAEGEQDSGAAAGRKRR
WGSSTAVTAKKPSISITTDSLKSLIPDIRPCLGQEAVVDLHPEEAVLSGAEDEERERSDQ
DLQIRRTVTQVVHLESQENGQKEAKMSRHEESEEDDPQGDGERIRAHDEKIDTSFSGAME
TQSPTHTSHDVEINTVTPSDTLIRRSISQQKTGVSITIDDPVRTARQPSPPRGKVSNIVH
ISNLVRPFTLGQLKELLSRTGTLVEEGFWIDKIKSHCFVTYSSSEEAVATRASLHGVKWP
QSNPKVLSVDFCQKDELDFHKGLADRPAAEEQGPGAVRGRTSGLPSLLPERDQWAERERE
MERREKARAEREWDRDKVREFGKPGEEKEGAPRRSRSREKRRKERGKSKEKKTEKKEKTA
EDPPAKLLDDLFRKTKAAPCIYWLPLTDEQFVQREAARAERMKEREKRRKEQDEEEEKKR
EEERKERVKAGGVPTGERSEGEKEKERERDRDRGRDRERERENDKRRDGYRRPEGRGAGG
GRRSRSRSDPRERRR
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtccctccgagtagcg
gatttaaaagctgctcttgaggagagaggactttcgaaaagcgggcagaaaaatgctctc
gtcaaaagactcaaaggggctctcatgcttgagaatcttcagaggacctccaccgctcac
ataggactgcagccaaactcacagattggtgaggaaatgagccaaaacagctttatcaag
cagtacctggctaaacaacaggagctcctgaggcagcggctggagagagaggcccgcgaa
gcatatgacacaaatgagcaagaggaccacacagaagttaataacagtacatcatgccct
cctcaagctcaggatgccacgccagcattggctgagcagcacaagccacctggcccctcc
ggtgtagatggattgtttggtgcagtaaatgagggggagggtaacaggaaccaggatgcc
gacatgtcaggtccccctgcttccggctctatggccatgcgcgttcctgccggtgagcag
cggccagagaaggggtctgcctcgaaccaagccgctgcagacagtgacgacgacgatagc
gaggatggcgacgaggatggcgaagatgaagattgggaaagcggtgctcggaggagaagc
aacagagagccggccagagcgcccacgaccagagagaggtctggggcatcctgtcaaccc
ccgcagcaacacatgccttcccttttgtcccctcaactccgccagccaactcctcctccc
tctccacctccagagttatcattccccctgcctgacacccctaaacagagcccccctagt
ccagatgtagccccagctaggcgctcatcgagtacctccagctctgggtcctccagcagc
ggcagccgcagtagcagcccagagccacagaggagtggacatgccgagcgcaagccgggc
ccactcacccttctggcacgtaaaatggagtcagaaggtgctttctcgggagcaggatgg
caccgccctggtgtggaaggtgaaaagcaagacggcagttctctggctgcattatttcct
ggcagagggcctcaagagggtctggtatctgccatcactcacacagccaatgcagcaggt
catgcgtcatttcccacggttccaggcattaaccagggtatcataggagcacattctgcc
catattcaactaccctttggtgtcctcaaggccactgcaacagaagagagggactctgag
atggaaagagaaagggcccttgatctggaaaggcaagagaagcagaggaaacttgagcaa
gaacgagcgatggaggtagagcgggaaagagctcttgcgctggagagagaagaaagagag
agagctctggagagagagagaattgaacgtcagcaggccttagaaagagaagaacaagaa
aaggctctgcagcgggagagagaacttgcccttgaacgagagaggcatcagagggaacta
gctttggctaaagagagggaagagctagagcaagctatagctcaagagagggcccgggag
agacagagggagatcgagagacagagggagatcgagagacagagggccctggagcaagaa
cgtctggagagagagaggcgagagagagaagaaatggagagagccatggccttggagcag
gaaagaagggagagggaaagggctcttgagcaagagatgcttcagagggagagagctctg
gaggctgagaggatagagagagaaaaggcgttagagcaggaaaggtttgaaagggaaagg
ttggagagacacagagccttggagcaagagagactagagagagagaaagccttggagcaa
gagagactagaaatggagagagccctggaaagagagcgactagagagagagagagccttg
gaaagagagcgtttagagagagagaaagctttggagaaacagcgactagagagggagaaa
gtcttggagcaagagagaatagaaagagaaagagctctagagcaggaacggctgaagcag
gagagagccctagaacagcagaggttagagcttgagaggaaggaaaaggagagaattgag
agagagaaagccttggagcaagaaaggatagagaaggaaaaggcctttgaacgagaaagg
gaggaaaaagagagagtggagagagaggcagccctggaagaggagaggaaggagaaggaa
agagccgagaaggagaggaaagagaggcttgagagggagaaagctctagagcaggagaat
attgaaagggagagagccttggagaaggagagggctctggaacatgagcggttagagaag
gagaaggccatgcagaaagaaaagaaggagcaggaaagggccctggaacaggagaaagag
agagctaggatggctgaaaaggagagggagagtcacctgcctccatccaagcgtggccgt
gagatcggtctcacccccctgcccactcctccccccctctccactgcaccagatagaaag
tcatcaacagagacagaagagcagggagatgaccatgcttcaaagccccagggtgaatca
gcagaatccatgtcaccaacacccccgatgcctcaatcctcattcaagaagttccggttc
ttaagggacaccccgattcacgtccaatcttcctccccttccatggtcatcaagcgaccc
cgtaacttctccgataccccccagccctgggcctcggctgtctcctcccttaccgatgtc
ggggaacgccaggaagaaggactccagccttccgctgaacaggaagacccacagaagggg
acaaaacaggaggtcgttgccagggcacccgggtccatgggggccgtgcctgagaaggag
accagtcttggtaccactctggtcccaagtcccaaaaaggaaaaggccataagctcagtg
tcggaggacaaagaaaaggaatccaccaaaaaagtagatgatgaaagccgtcctacacac
ccactggacgctgcacagcgtagaggaagagatacaaagaaggaagcgaaacaagcaaga
cgaagatcatcatctaacgattcctcttcctcagaatcagactctgggtcctcatcatct
gggtcgtctggctcatcctcctcctctcaagagaaaacccgctccactacaagaggtaga
aaggatgggaagcctgacagagatacctcgccacaacacagaatgacactagaggctaag
gctgaaggtttaaaggaagctcagaaagcctccccttccaaaagagagatgtctgtagag
aagagtaacacagctgctgatgaagacactcgcaccaagaaaatgttcatggaagcacca
accagagaggagtcacaaaggaagagaaaggacaacgagggagaggaggaaacggacaaa
gaaaggcaggtgaaggagtctgccatggcagagccggagaagcatccagagaccagcgag
gagacaccaaaggccttctcagctcgtaagatctctattagcagcagtaaatcatcccca
ggcactggcagtgcagagggcgagcaggactccggggctgcggccggtcgcaagaggagg
tggggctccagcacagctgtcactgccaagaaaccttccatcagcattaccacagattca
ctcaagtctctgatcccagacattcgcccgtgtctcgggcaagaggcagtagtggacctg
caccctgaggaagctgtcctctccggggctgaggatgaagagcgggagcgctctgaccag
gaccttcagatccgacgcaccgtcacacaggttgtacacttggagagccaggagaatgga
cagaaagaagcaaagatgagcagacatgaggagtcggaggaggatgacccgcagggagac
ggagagaggataagggcgcatgacgaaaagatagacacctcattttctggagccatggaa
acccagtctccaacacacaccagccatgatgtagaaatcaacactgtgacccccagcgac
accctcattcgtcgctctatcagccagcagaaaacgggtgtttccatcacaatcgatgac
cctgttcgcacggcccggcagccatcgcctcctcgcggcaaagtctccaacattgttcac
atcagcaacctggtgaggccattcactctggggcagcttaaagaactgctcagcagaact
ggcaccctggtggaggagggcttctggatcgacaaaatcaagtctcactgcttcgtcact
tactctagctcagaggaggccgtcgctacacgggcatctcttcatggcgtgaaatggcct
cagagcaacccaaaagtcctcagtgtagacttctgccagaaagatgagctggacttccac
aaaggcttggcagacagacccgcagcagaggaacaggggcccggcgccgtccgtggtcgc
acgtcgggcctgccctctctcctccccgagcgcgaccagtgggccgaacgcgagcgcgag
atggagcgccgggagaaggctagagcagagcgggagtgggatcgcgacaaggtcagagag
tttgggaaaccgggtgaagagaaggagggagctccacggaggtcacgctccagagagaaa
cgccgcaaggagaggggaaagagcaaggagaagaaaacggagaagaaagagaaaacagct
gaggatccccctgcaaagctgcttgatgatttgttccgcaaaaccaaagcggctccttgc
atatactggcttccactcacggacgaacagtttgttcaacgggaagctgccagagcagag
cgcatgaaggagcgtgagaaacggaggaaggagcaagatgaggaggaggagaaaaaaagg
gaagaggagcgcaaggagagggtgaaagctggaggcgtcccaactggagagcgcagtgag
ggtgagaaggaaaaggagagggagagggaccgagacagaggtagggacagggagagggag
agggagaatgacaaacgcagggatggctaccgtaggccagagggccgcggggcaggcggg
ggccgacgctcacgcagccgcagcgacccacgagaaaggcgacgttaa
DBGET
integrated database retrieval system
