Anoplopoma fimbria (sablefish): 129089434
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Entry
129089434 CDS
T09102
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03030
DNA replication
afb03410
Base excision repair
afb03420
Nucleotide excision repair
afb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129089434 (rfc4)
03410 Base excision repair
129089434 (rfc4)
03420 Nucleotide excision repair
129089434 (rfc4)
03430 Mismatch repair
129089434 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129089434 (rfc4)
03036 Chromosome and associated proteins [BR:
afb03036
]
129089434 (rfc4)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129089434 (rfc4)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129089434 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
129089434 (rfc4)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
129089434 (rfc4)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129089434 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
129089434 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_30
AAA_11
Gp44_lid
AAA_24
DUF815
Mg_chelatase
AAA_14
RuvB_N
SLFN-g3_helicase
KH_DUF2096_C
AAA_19
DNAX_ATPase_lid
AAA_5
ResIII
Cdc6_lid
AAA_28
AAA_7
Motif
Other DBs
NCBI-GeneID:
129089434
NCBI-ProteinID:
XP_054452861
LinkDB
All DBs
Position
3:complement(11162035..11174371)
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGAMVQSTRPQKDKTAAGPSTEKKAKLIPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPHLYRQRVLELNASDERGIQVVREKVKN
FAQLTVAGTRPDGKLCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSDGDLRKAITFL
QSAARLNVDKEITEKAVIDIAGVVPPKMIDNLLQICFTGTFEKLEVAVKNMVDEGFAATQ
ILSQLHESVIEQELSDKQKSAVTEKMAVVGKCLTDGADEYLQMLSLCSLIMQQASQNN
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcctttttgaaaggagcgatggttcagtctaccagacctcagaaggacaagaca
gcagcagggcccagtacagagaagaaagccaagcttattccatgggtagaaaaatacagg
cctaagtgtgttgatgaggtggccttccaggaggaggtggtagcagtgctgaagaagtct
ctggaaggagcagatcttcccaacctgctcttctatggccctcctggaacgggaaagaca
tccaccatcttggctgctgccagagagctttatggtccacatctgtacagacagagggtg
ctggagctcaacgcctctgacgagcgaggcatccaggttgtcagagagaaggtgaagaac
tttgctcagctcaccgtggccgggactcgcccagatgggaagctgtgtcctccctttaag
atcatcatcctggacgaggcagactccatgacgggaccggctcaggctgctctcaggcgg
accatggagaaggagtcccgcaccacccgcttctgcctcatctgcaactacatcagcagg
attattgagccgctgacctccagatgttccaagttccgcttcaaacctctggccaatcag
atccaagaagagcgcctgctggagatctgtgagaaggagaacctcaagtacaccaaagag
agcatagcagcgttggtgagggtgtctgacggagacctgcggaaagccataaccttcctc
cagagtgctgcgcgccttaacgtggacaaggagatcacagagaaagctgtcattgacata
gccggggtcgtccctcccaagatgattgacaacctgctccagatctgcttcacaggcaca
tttgagaaactagaggttgccgtcaagaacatggtggatgagggctttgcagccacacag
atcctgagtcagctccacgagtctgtcatagagcaggagctgagcgacaagcagaagtca
gccgtcacagagaagatggcggtggtgggaaagtgcctgacagacggtgcagacgagtac
ctgcagatgttgagtctgtgttcactcatcatgcagcaggcctcccagaacaactag
DBGET
integrated database retrieval system
