KEGG   Anoplopoma fimbria (sablefish): 129089671
Entry
129089671         CDS       T09102                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03420  Nucleotide excision repair
afb04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    129089671 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    129089671 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:afb04121]
    129089671 (cul4b)
   03400 DNA repair and recombination proteins [BR:afb03400]
    129089671 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129089671 (cul4b)
Ubiquitin system [BR:afb04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     129089671 (cul4b)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      129089671 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      129089671 (cul4b)
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   129089671 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 129089671
NCBI-ProteinID: XP_054452943
LinkDB
Position
4:17404291..17416549
AA seq 870 aa
MFPTGLSSPNPPPPPTQEARPAATDVKPDSGHITSPKKRKINGSEREDTSDTISSSPPKT
LNSSSSSSSSSSSSSSPTPLHIQKKLRFEDSVDFIGLDVKMAEEAAAAAAASCSNNRSRA
AFLAGGAAHHANGLSKPAASGIFSSSKPGAAKKLVIKNFKEKPKLPENYTQETWQKLKEA
VEAIQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKAQIDQFREDALDSV
LFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQ
SKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQR
LMQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLTH
LLDENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFK
DKVDHVIDICFMKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEEL
EKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTS
KLEGMFKDMELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVR
LQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFT
LEEIKLATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKI
NQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKP
ADLKKRIESLIDRDYMERDKENPNQYNYVA
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtctatcttcccctaatcccccaccaccgccaacccaggaggcaaga
ccagcggctactgatgtcaaacccgacagcggacacatcacgtccccgaagaagaggaag
ataaacggatcagagagggaggacacctcggacaccatctcctcttcgcctcccaagacc
ctgaattcctcttcttcctcctcttcctcctcctcctcctcctcctctcccactccgctg
cacatccagaagaagttgaggttcgaggactcggtggatttcatcggactggatgtgaag
atggccgaggaggctgcagccgccgccgccgcttcgtgctccaacaaccggagcagagcc
gcgttcctggccggcggcgcggcgcaccacgccaacgggctcagcaaacccgcagcgtcc
ggcatcttctccagcagtaaacccggggccgcaaagaaactagtcatcaagaacttcaaa
gaaaagcccaaattgcccgagaactacacacaggagacctggcagaagctgaaggaggcg
gtggaggccatacagaacagcacttcaatcaagtacaatttagaggagctctatcaggct
gttgagaacctgtgctcccataagatatctgccaagctttacaaacagctgagggccgtg
tgtgaagaccacatcaaggcacaaattgatcaattcagagaggatgccctggacagtgtg
cttttcctaaagaaaattgacaagtgctggcaagatcactgcagacaaatgatcatgatt
cggagtatatttttgtttttggaccgcacctatgttttacaaaattcaatgctgccatcg
atctgggacatgggtctggagctgttcaggttctacatcatcagtgacctgaaggtccag
agtaaaaccatcgacgggattctgctgctcattgagagggaacgaaacggagaggcgata
gaccgcagtctgctgaggagcctgctgagcatgctctctgatctccagatttatcaagac
tcctttgagcaacgctttttggaggaaaccaatcggctgtatgctgcagagggacagagg
ctgatgcaggagagagaggtaccagaatatctccatcatgtcaacaagcgtttagaggag
gaagctgacagagtcatcacatatctagaccagagcacacaaaaaccgctcattgctact
gtggagaagcagttgttgggtgaacatctcacagctactctgcaaaaagggttgactcac
ctgctggatgagaacagaattcaggatctgtctcttctctatcagctcttcagtcgagtg
cgaggtggcgttcaggttctcctgcagcactggatagagtacataaaggcatttggaagc
acaatcgtaatcaatccagaaaaagacaaaacaatggtgcaagagttgctagacttcaag
gacaaggtggatcacgtcatcgacatctgcttcatgaagaacgagaagtttgtcaacgcc
atgaaggaggctttcgaaacgttcatcaacaaacggccaaataaacctgcagagctcata
gcaaaacatgtggattcaaagctaagggcaggaaacaaagaagcaacagatgaagaactg
gagaagatgctggataagatcatgataatctttagattcatctatggaaaagatgttttt
gaggccttttacaaaaaggatctggctaagaggttgctggttggaaaaagcgcctctgtg
gatgctgaaaaatcaatgttatcgaagctgaaacatgaatgtggagcagcgttcaccagc
aaactggaagggatgttcaaggatatggagctttctaaagacatcatggtgcagttcaaa
cagtatatgcagtgccaaaacattcctggcaacattgagctgacggtgaacatcctgacg
atgggctactggccaacctatgtcccgatggaagtgcacctgcctgctgagatggtgcga
ctgcaagagatcttcaagaccttctacctgggcaaacacagcggcaggaagctgcagtgg
caatcaacacttggtcattgtgtcttaaaagctgaatttaaagagggaaagaaggagctg
caggtgtcactcttccaaacacttgtgctgctgatgtttaacgagggagaggagttcacc
ctggaggagatcaaactggcaacaggaatagaggacagtgaactgcgcaggactctgcag
tcactagcttgtggaaaagcacgcgtcctcaccaaaatccccaaaagcaaagatgtggag
gacggggacaagttttcttgcaatgatgacttcaaacacaagctcttcaggatcaaaata
aaccagatccagatgaaagaaacggtggaggaacaagccagtacgacagaaagggtgttt
caggaccgtcagtatcagattgatgcggccatcgtgcggatcatgaagatgaggaagact
ctgagccataacctcttgatgtcggaagtgtacaaccagctcaaattccctgtcaagcct
gctgacttgaaaaagaggatagagtctcttattgacagggactatatggagcgtgacaag
gagaaccccaaccagtacaactacgtggcttag

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