Anoplopoma fimbria (sablefish): 129089794
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Entry
129089794 CDS
T09102
Symbol
abca1b
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb02010
ABC transporters
afb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
129089794 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129089794 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
afb02000
]
129089794 (abca1b)
Transporters [BR:
afb02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
129089794 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
129089794
NCBI-ProteinID:
XP_054453134
LinkDB
All DBs
Position
4:complement(27651825..27689070)
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AA seq
2188 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIVWPLLIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRSPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLDGFKELATALQELQKSRSGFKLKHFLRDNETLSVFLVRNASLSELNVQQIRDADVDLE
KVLLKGFGVHLRDMCPSKGGQRRVEDFVTIADQQVSLLVQEVICRAPLTWLNLAEEHFLN
NLDFLKPIQRDVRSDPEAVKLVARATNNLLDSLGSLAVELAGMKSWVDLRNEIVFLTQNA
TSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDESTSLYDNSST
PYCNSLVKNMDSNPMSRMIWTALKPLLMGKILYTPHTPATQKVIHEVNRTFQELGVFRDL
GGMWEEMRPKVWNFMENSEQMDVIRTLLKNNATARLFGAQLSHTDWTVDDISNFLSKREV
KRPGGALTWREVFNETDQAVMSISRFMECVNLDKLEPVSSEERLVNQSMVLLEDRKFWAG
IVFPDIDPNATELPAKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSY
LQDVIEQGIIRAMTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
LKSVVYEKEARLKETMRIMGLNNGILWFSWFISSLIPLLVSAGLLVLLLKKGNLLPYSDP
GVVFLFFGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGA
KVFASLLSPVAFGFGCEYFALFEEQGVGIQWTNLVSSPLEEDDFSLRTAIIIMYFDSFLY
GVLTWYIEAVFPGQYGIPRPWFFPFTKAYWFGEKEGKSNKVPLSRKENPEAVCIEEEPAH
LEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGRDIRTELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQ
ILQDTGLPHKRTSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKEP
EPSLSSCRNSSSTVSFTKKEEECTSVSSSDAGLGSEHESEAPPIENGPAASICNVPFVRP
DVSLVSGLILSHVPAARLVEDLGHELTYVLPYSAAKDGAFVELFKDLDLKLTDLGISSYG
VSDTTLEEIFLKVAEDNGVDTEVPSDGTLPVRRRRRTHAFGGGDHQSCLRPLTEDDDKDC
NESDGDPECRETDWLNCTDGKGSYQVKGWSLKKQQFIALMWKRFLYARRSRKGFFAQIVL
PAVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPGDANMQKLLGALLDAPG
FGTRCMDGYPIPDTPCTMGDEDWRTPDVPESLQQLFTSSNWTMEDPSPACFCSCDGKKKM
LPDCPAGAGGLPPRGMTVVVQMKLSSTDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWV
NEFRYGGFSLGARSTQVLPPANEIDDAIERVRKIFELQKGAAADRFLDSLSGFINGLDTK
NNVKIWFNNKGWHSIGSFINVMNNGILRANLPEGSDPTQYGIRAFNHPLNLTKEQLSQVA
LVTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWVANFIWDM
CNYVVPATLVIVIFICFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAY
VVLTSVNILMLRSPLEWDMVGKNLFAMAVEGLVFFIITVLIQYRFCIKPRSVSKLTKLGA
LGDEDEDVARERQRIVHGLGHGDILELRQLTKVFKRKQKPAVDQLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDTPVTSGEAFLAGKSILREIDAVHQNMGYCPQFDSINELLTGREHL
ELYAVLRGVPEEQVCDVAEWGIRKLGLMKYAEKRAGSYSGGNMRKLSTAMSLIGAPPVVF
LDEPTTGMDPKARRALWNCIHSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVXGPDADLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSL
THIFSILAKNKDLLRIEDYSVTQTTLDQ
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctccacccagctgggtctgctgctgtggaagaacttcacctacagacgccgg
cagacgcttcagctcctggtggagatcgtctggccgctcctcatcttcttcatcctcatc
gccgtgcggctcaactaccctccatacgaacagcatgagtgtcacttccccaacaaggcg
atgccgtcggccggcacgctgccctggcttcagggaatcctctgcaacgccaacaacccg
tgcttcaggagcccgacgccgggcgagtctccgggggtcgtcggcaacttcaacgactcc
ataatttctcgtctgttttcggacgccaagaagattcttctgtacagtcagaatgataaa
aacctggatggatttaaggagctcgcaacggctctgcaggagctgcagaagagccgatca
ggattcaagttgaagcacttcctgcgggacaacgagactctgtctgtgttccttgtgaga
aacgcctcgttgtctgaactaaacgtccaacagatcagagatgccgacgtcgacctggag
aaggtcctcctgaaaggtttcggcgtccacctgagggacatgtgtcccagtaagggaggc
cagcggcgggtggaggactttgtgaccatcgcggaccaacaggtgtcactgctggtacag
gaagtcatctgtcgggcgccgctcacctggctgaaccttgctgaggagcacttcctgaac
aacctggacttcctgaaacccattcagagggacgtgaggtccgaccccgaggccgtcaaa
ctggttgccagggcgaccaacaacctcctggacagtctgggttcactggcagtcgagttg
gccggcatgaagagctgggtcgacctgaggaacgagatcgtgttcctgacgcagaacgcc
acgtcgtcgccgagcaccatgtaccaggccgtgtctcggattgtgtgtggtcacccggag
ggcggcggcctgcagatcaagtccctcaactggtacgaggacagcaactacaaggccctg
ttcgggaaccacaacagcagcgaggacgagtccacgtcgctgtacgacaactcgtccacg
ccgtactgcaacagtctggtgaagaacatggactccaacccgatgtcccggatgatctgg
acagccctgaagccgctgttgatggggaagatcctgtacaccccccacacccccgccacc
cagaaggtcatccacgaggtgaacaggaccttccaggagctcggtgtgttcagagacctg
ggcgggatgtgggaggagatgagacccaaagtctggaactttatggagaacagcgagcag
atggacgtgatccggactctgctgaagaacaacgccaccgccagattatttggcgctcag
ctgtcccacaccgactggaccgtggatgacatttccaacttcctgtccaagcgggaagtc
aagaggcccggcggcgccctcacctggagggaggtgttcaacgagacggaccaggcggtc
atgagcatctcccgcttcatggagtgtgtgaacctggacaaactggagccggtctccagc
gaggagcgactggtcaaccagtccatggtgctgctggaggacaggaagttctgggcgggg
atcgtgttcccggacatcgaccccaacgccaccgagctgccggccaaactcaactacaag
atccgcatggacatcgacaacgtggagaggaccaataagatcaaagacgcgtactgggac
ccgggtcctcgtgccgacccttttgaggacatgcggtacatctggggcgggttctcgtac
ctgcaggacgtcattgagcaaggcatcatcagggcgatgacgggcaccaaggagaagacg
ggcgtctacatccagcagatgccttatccctgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgcctctcttcatgactctggcgtggatgtactcggtggcgatcatc
ctgaagagcgttgtgtacgagaaggaggctcgtctgaaggagaccatgaggattatggga
ttgaacaacggcatcttgtggttcagctggttcatcagcagtctgattcctctgctggtc
agcgccggcctgcttgtgctgctgctgaagaaggggaacctgctgccctacagcgaccct
ggcgtggtcttcctcttcttcgggtccttcgccgttgttaccatcatgcagtgcttcctc
ctcagcacggcgtttgcccgtgctaacctggccgccgcctgcggaggaatcatctacttc
accctctacctgccctacgtgctctgcgtggcctggcaggactacatcggcttcggagcc
aaagtcttcgctagcctcctgtccccagtggcgtttgggttcggctgtgagtacttcgcc
ctgttcgaggagcagggggtcggcatccagtggacgaacctggtgtccagtcctctggag
gaggacgacttcagccttcgcaccgccatcatcatcatgtactttgactccttcctgtac
ggagtcctcacctggtacatcgaggccgtgtttccaggtcagtacgggatccctcgaccg
tggttcttccccttcactaaggcctactggttcggagagaaagaaggaaagtccaacaaa
gtcccgctgagccggaaggaaaacccagaagctgtgtgtatagaggaggagccggctcac
ctggaacccggagtctacatcgagaacctggtgaaggtttaccgtcacgggaagaagctg
gcggtcgacggactgacgctcggcttctacgagggacaaatcacctccttcctgggacac
aacggagccgggaagaccacaaccatgtccatcctgaccggtctgttccctccgacctct
ggtaccgcctacatcctgggcagagacatccggactgagctgagtgccatcagacagagt
ctgggagtctgtcctcaacacaatgtcctcttcagcatgctgacggtggaggagcacatc
tggttctacggtcggctcaaaggcctgtcggagcagcaggtgaaaggtgagatcgagcag
atcctgcaggacacggggctgcctcacaaacgcacctccaggaccagtgctctgtccggc
ggcatgcaaaggaagctgtctgtggcactggccttcgtcggggggtcgaaggtcgtgatc
ctggacgagcccacggccggtgttgacccttacgcccgcagagggatctgggatctgctg
ctgaagtaccgacagggtcggaccatcatcctgtccacacaccacatggacgaggcggac
atcctgggcgaccggatcgccatcatctctcatgggaagctgtgctgcgtgggctcgtct
ctgtacctgaagaaccagctggggacggggtactacctgacgctggtcaagaaggaacca
gagccgtcgctgagctcctgcaggaactcctccagcaccgtgtccttcaccaagaaggag
gaggagtgtacctccgtcagcagcagtgacgccggactcggcagcgaacatgaaagtgag
gctcctcccatcgaaaacggcccagcggcgtccatctgcaacgtcccctttgtgcgtccc
gacgtgtccctggtctcgggtctgatcctgagtcatgtccccgccgcccgcctggtggag
gacctcggacacgagctgacctacgtcctgccgtatagcgccgccaaggacggagccttc
gtggagctcttcaaagacctggacctgaagctgaccgacctcggcatctccagctacgga
gtgtccgacaccacgctggaggagattttcctgaaagttgctgaagataacggagtcgac
actgaagttccctcagatggaacacttcctgtccggaggcggaggaggactcacgccttc
ggtggaggagaccatcagagctgtctgagacctttaacagaggacgacgacaaggactgc
aacgagtctgacggagatccagagtgccgggagacggactggttgaactgtaccgacggt
aaaggatcgtatcaggtcaaaggttggagtctgaaaaagcagcagtttatagctctgatg
tggaaacgatttctgtacgctcgacgctcaaggaagggcttcttcgctcagattgtcctt
cctgctgtgtttgtgtgcatcgctctggtcttcagtctcatcgtccctccttttggaaaa
tatcccagtctggagctgcagccctggatgtacgaggaccaggtcaccttcatcagtgac
gacgctcctggagacgccaacatgcagaagttgttaggcgctctgctggacgcaccgggc
ttcgggactcgctgcatggacggatatcccatcccagacactccctgtacgatgggtgat
gaggactggcggactccggatgtccctgaaagcctccagcagcttttcacctcctcaaac
tggaccatggaggatccgtctccggcctgtttctgtagctgcgacggcaagaagaagatg
ctgccggactgtcctgctggagccggaggactgcccccccgaggaatgactgtcgttgtt
cagatgaagctgagctccaccgacactctgcagaacctgactggaagaaacatctctgac
tacctggtgaagacgtacgctcagatcattggcaagagtctgaagaacaaagtctgggtg
aacgagttcaggtacggaggcttctcattgggcgccaggagcactcaggtcctcccaccg
gccaatgagatcgacgacgccatcgaacgagtccgaaagatctttgagcttcagaaggga
gcggcagcggatcgattcctcgacagtctgtctggtttcatcaacggtttggacacaaag
aacaacgtgaagatctggttcaacaacaaaggctggcacagcatcgggtccttcatcaac
gtgatgaacaacggcatcctgagggccaacctacctgaggggagcgacccaacccagtac
ggcatccgggccttcaaccacccgctgaacctcaccaaggagcagctgtcacaggtggct
ctggtaacgacctctgtggacgtcctggtgtccatctgtgtgatcttcgccatgtccttc
gtcccggccagcttcgtggtcttcctcatccaggagcgagtcagtaaagccaaacacatg
cagttcatcagcggagtgcagccgctgctctactgggtggcaaacttcatctgggacatg
tgtaactacgtcgtcccggcaacgctggtcatcgtcatcttcatctgtttccaacaaaaa
gcttacgtatcgtccaccaacctgccggtcctcgctctgctgctgctgctctacggctgg
tccatcactcctctcatgtatccggcctccttcctctttaagatccccagcaccgcctac
gttgtcctcaccagcgtcaacatcctcatgttacgttcccctctggagtgggacatggtg
ggaaagaacctgtttgcgatggctgtggagggattggtgttcttcatcatcaccgtcctc
atccagtaccgcttctgcatcaaacccaggtcggtcagtaaactcaccaaactgggagca
ctgggagacgaggacgaggacgtggcccgagagagacagaggatcgtccacggcctcgga
cacggagacatcctggagctccggcagctcaccaaggtgtttaaacggaaacagaaaccg
gcagtggatcaactgtgtgtcgggattccacctggagagtgcttcgggctgctcggggtg
aacggagctggaaagacgacgacctttaagatgctgacgggggacacgccggtgaccagc
ggagaggccttcctggcggggaagagcatcctgagggagatcgacgcggtccatcagaac
atgggatactgtcctcagtttgactccatcaacgagctgctgacaggaagagaacatctg
gaactctacgccgtcctgagaggagtaccagaggaacaagtctgtgacgtggcagagtgg
ggcatcaggaagttgggtctgatgaagtacgctgagaaaagagctggaagttacagcgga
ggaaacatgaggaagctctccaccgccatgtctctgatcggagcgccgcccgtcgtcttc
ctggacgagcccaccaccggcatggaccccaaagcccggcgggccctctggaactgtatc
cacagcatcatcaaggagggacgctccgtcgtcctcacctcccacagtatggaggagtgt
gaggctctgtgcaccaggatggccatcatggtgaacggcaggttcagatgtctcggcagc
gtccagcacctgaagaacaggtttggtgacggctacaccatcatcctgcgggtgnggggg
ccggacgccgacctgctgcccgtcatgaagttcatcgagagcgagctgagcggcagcact
ctgaaggagaaacacaggaacatgctgcagtaccagctgccatcttctctcacctccctc
acacacatcttctccatcctcgccaagaacaaggacctgctgaggatcgaggactactcc
gtcacccagaccaccctggaccagtaa
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integrated database retrieval system
