Anoplopoma fimbria (sablefish): 129089867
Help
Entry
129089867 CDS
T09102
Name
(RefSeq) coatomer subunit beta'-like
KO
K17302
coatomer subunit beta'
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129089867
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129089867
Membrane trafficking [BR:
afb04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
129089867
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
129089867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_IFT122_1st
PEP5_VPS11_N
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_LRRK2
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Clathrin
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
129089867
NCBI-ProteinID:
XP_054453239
LinkDB
All DBs
Position
1:4800334..4813000
Genome browser
AA seq
1176 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSADLHPTEPWMVASLYSGTVVVWNHETQMMVKTFELCDLPV
RVAKFVARKHWVIAGADDMQIRVFNYNTLERVHMFEAHSDYIRCIVVHPSQPYILTSSDD
MLIKLWDWERKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSRTPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVTCVCFHPE
LPIILTGSEDGTVRVWHSNTYRLENTLNYGMERVWCICGQHGSNSVALGYDEGSIIIKLG
REEPAMSMDSSGKIMWARHSEVQQANLKAMGETEVKDGERLPLGVKDMGSCEIFPQTIQH
SPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSQYAVREGSSMIKIFKNFKE
KKTFKPDFGAEGVFGGFLLGVRSNSGLAFYDWESSELIRRIEIQPKHIFWSDSGELVCIG
TDESFFVLRYLPERVAAAQESKEEITEDGIEGAFEVLGEVPEVVKTGVWVGDCFIYTSSL
NRLNYYVGGEIITIAHLDRTMYLLGYIPKDDRLYLGDKELNVISYLLLLSVLEYQTAVMR
RDFSTADKVLPTIPKEQRTRVANFLEKQGFRQQALAVSTDPEHRFELALQLGELKMAHEL
ASEAESEHKWKQLAELATTKCQFSLAQECLHQAQDYGGLLLLATASGNASMVGKLAEGAE
RDGKTNVAFLTYFLQGRLDKCLDLLIETNRLPEAAFLARTYLPSHVSRVVKLWKASLSKV
NQKAADALADPSQYSNLFPGLQQALLAEEYLKETHVRVRPAAEYPLITPNEDRNVLEESA
GFESKGELTDPEVKSINETVMAAAVTEPILLKQEIIEPVTATQEKSIPSAASPLPVTVTE
EYDEPEKAESVSSEEDAIAEPEEALISVEDDVVRSSPAEDVRSSVETDVEEIPPATEPAA
CESETHLMEATEETQGETIATESVLVSTGLIVDTESIATGEMPVYEELETGIFSSEAPAE
ETGVTEELVSETAASPVAVEELISFESTDSPLLDVPVQSQTFPDLALDPLLDPLQDTMPA
LKPVLAQEPEQEDQTTTLPVKTEDHLEPAAALKAEPEVLSTKDRDVAEKEAGPEGAEDPA
EDEMNDEILDDLDLDNFDLEDIDTTDVNLDEDFLSE
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcgtctggacatcaagcggaagctgaccgcccggtcggaccgggtgaagagt
gcggatctgcaccccaccgagccctggatggtggcgagcctctacagcggcaccgtggtg
gtctggaaccacgagacacagatgatggtgaaaaccttcgagctgtgcgaccttcctgtc
agagtggccaagtttgtcgccaggaaacactgggtcatcgccggagcagatgacatgcag
atccgtgtgttcaattacaacactctggagcgagttcacatgttcgaggctcactctgac
tacatccgctgcatcgtcgtccacccttcacagccctacatcctcaccagcagcgacgac
atgctgatcaagctgtgggactgggagagaaagtggtcgtgcagtcaagtgtttgaggga
cacactcactacgtcatgcagattgtcatcaaccccaaagacaacaaccagtttgccagt
gcctctctggacagaaccattaaggtgtggcagctgggctccaggactcccaacttcact
ctggagggccatgaaaagggggtgaactgcatcgattactacagcgggggggacaaaccc
tacctcatctcaggagctgacgaccgcctggtcaagatctgggattaccagaataaaacc
tgtgttcagactctggagggtcacgcccagaatgtgacctgcgtctgtttccatccggag
ctgccgatcatcctcacgggctccgaggacggcaccgttcgagtgtggcactccaacacc
taccggctggagaacacactcaactacggcatggagagggtgtggtgtatatgcggccag
cacggctccaacagcgtggctttgggctatgatgaaggcagcatcatcatcaagctgggt
cgggaggagccggccatgtccatggactccagtgggaagatcatgtgggctcgccactcc
gaggtgcagcaggccaacctgaaggccatgggagagaccgaggtcaaggacggagagcgg
ctgccgctgggcgtcaaggacatgggcagctgtgagatcttcccccagacgatacaacac
agccccaacgggagattcgtggtggtgtgtggagacggggagtacatcatctacaccgcc
atggccctgaggaacaagagcttcggctcggctcaggagttcgtctgggcccacgactcc
tctcaatatgccgtaagggagggcagcagtatgatcaaaatattcaagaacttcaaagag
aagaagacttttaaacctgacttcggggctgaaggtgtctttggtggcttcttactgggc
gtgaggtcgaacagcggcctggccttctacgactgggagagttctgaactgatccgccgc
atcgagatccagcccaaacacatcttctggtccgactctggggaactggtgtgcatcgga
acagacgagtccttctttgtgctgcgctacctaccagagagagtggcggcggcccaggag
tccaaggaagagataacggaggatgggatcgagggcgccttcgaggtgctgggtgaggtc
ccagaggtggtgaagacgggggtttgggtgggagactgcttcatctacaccagctctctg
aacagactgaactactatgtcggaggagagatcatcaccatcgctcacctggacaggacc
atgtatctgctgggctacatccccaaggacgaccgtctctacctcggagacaaagagctg
aacgtcatcagctacctgctgctgctgtcggtgctggagtaccagacggccgtcatgagg
agggacttcagcacggccgacaaggtcctacccacaatccccaaggagcagaggaccagg
gtggcaaactttctggagaaacagggcttcagacagcaggccctggccgtgtccaccgac
ccggagcacaggtttgaactggccctgcagctgggggagctcaagatggcgcacgaactg
gcctcggaggcagagtcggagcacaaatggaagcagctggcggagctcgctactacaaag
tgccagttcagcctggctcaggagtgcctgcaccaggctcaggattatgggggattactg
ctgttggccaccgcctcgggcaacgccagcatggtgggcaagctggccgagggggcagag
agggacgggaagaccaacgtggccttcctcacctacttcctgcagggaagattggacaaa
tgtctggaccttctcatcgaaacaaatcggttgccagaggctgcctttctggcaagaaca
tatctgcccagccatgtgtcaagggtggtgaagctgtggaaggcgagtctgtccaaggtc
aaccagaaggcggcagatgctctggctgacccgtctcagtacagcaacctgttcccgggc
ctccagcaagccctgctggctgaggagtacctgaaggagactcatgtcagggtcaggcct
gctgcagagtacccactcatcacgccgaatgaggaccgtaatgttctggaggaatctgca
ggttttgagtccaaaggagagctcacagatccagaggtgaagagcataaatgaaaccgtc
atggctgcagcagtgacggaacccattcttctaaaacaggagatcattgaacccgttaca
gcgacacaagaaaaatccatcccatcagcagcatcccctctgcctgtcactgtaacagag
gagtatgatgaaccagagaaagcagagtccgtgtcttcagaggaggacgccatcgctgaa
ccagaggaggctttaatctctgtagaggacgacgtggtacgatccagtcccgcggaagat
gtccgatcatcagtcgagacggatgttgaggaaattcctccagcgaccgaacctgctgcc
tgtgaatctgaaacacatctaatggaggcaacagaagaaacacagggtgaaaccatagca
acagagagtgtcctcgttagcactggtctgatagttgatacagaatctatagcgactggg
gaaatgcccgtttatgaagaactggaaacgggtatcttctcctcagaagcaccagcagag
gagactggtgtcactgaggaacttgtctcagaaacagcagcgtcacctgtagcagtggag
gagctcatctcctttgaaagcacggacagtccacttctagatgtgcctgttcaaagccaa
acgttcccagatctggctcttgatccactgctagacccactccaagacacaatgccagca
ttgaagccggtcctggctcaggaaccagaacaagaggaccagaccacaacactcccggta
aagactgaggaccacctggagcctgcagcggctctaaaggcggagccagaggttttatcc
actaaagatagggacgtagcggagaaggaggcgggccctgaaggagccgaggatcctgca
gaggacgagatgaatgatgagatcctggatgatctggatctggacaattttgacctggaa
gacatcgacaccacagatgtcaacctggatgaggatttcttgagtgaataa
DBGET
integrated database retrieval system
