Anoplopoma fimbria (sablefish): 129089879
Help
Entry
129089879 CDS
T09102
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129089879 (pcdh19)
Cell adhesion molecules [BR:
afb04515
]
Cadherins
Protocadherins
129089879 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Motif
Other DBs
NCBI-GeneID:
129089879
NCBI-ProteinID:
XP_054453255
LinkDB
All DBs
Position
4:17730613..17784471
Genome browser
AA seq
1094 aa
AA seq
DB search
MQTKEMELIQLIAVFLLCWVAAEAVINLKYGINEEMKPGSVIGNVTKDALKQGFQVALQP
PYLRVISNSEPRWVELSPAGILTTQMKIDRDVVCRQNPKCIISLEVMSNSMEICVIKVEI
EDLNDNAPRFPTSHIDIEISENASPGTRFPLEGASDPDSGIFGVQSYSITPNELFGLEIK
TRGDGSKIAELVVQKSLDRETQSHYSYEISAEDGGDPPKIGAVQLNIKVIDSNDNNPVFD
EPVYTVNVMENSPINTLVIDLNATDPDEGTNGEVVYSFNSYVTEKTRDAFKIDPGTGIIT
VNGILDYETARIYEIDVQAKDLGPNSIPAHCKVTVNVMDTNDNPPVISLLSLNTEMVEVS
ENAQRGYVIALVRVSDKDSGANGKVQCRLQGNVPFRLQEYESFSTILVDGRLDREQKDTY
NLTIQAEDSGTPPLRATKSLVVKVTDENDNPPHFLKPHYQEMVMENNLPGSCLLAVSAED
PDLGMNGTVSYSIVPGEIKHMDVNTYVSINPSGRIYSMRSFDHEYTRTFDFKVLARDNGN
PSLSSNATVRIVVLDVNDNTPVMTNPPLVNGTAEVSIPRNAGVGYMVTQVKADDYDEGEN
GRLTYTISEGDRAFFEIDQVNGEVRSTRMFGENAKSNYEITVVARDHGKPSLSASAYIVV
YLSPDLNAQEPIGPVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCSFFYL
RRVAEYSYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQSL
PLGCRRSESTFLNVENQNSRNAAPNHGYQHPFTGQAHQQPDLIINGMPLPETENYSIDSS
YVNSRAHLIKSTSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGHYVDTAVNDVLNMTVPP
NVCQLPDQDPSEGFHCQDECRILGHSDRCWMPRVPIPARAKSPEHGRNVIALSIEATTVD
VPHYEDGTTKRTFATFGKDGPEDLERGELKGKRTQESHVCSPKANGGAVREAGNGREAAS
PITSPVHLKSPMSKTSSAYNTLKCRDAERIANHSLLRQPEGKDSEPAVREINTLLHDGRD
KESPSSKRLKDIVL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaaggagatggaattaatacaattaattgctgtgttcctcctgtgttgggtc
gcggctgaggctgtgatcaacctaaagtatggaataaacgaggagatgaagcccgggtca
gtcattggaaacgtgacgaaggacgcactgaagcaagggtttcaggtggctctgcagccc
ccgtacttgagggttatctccaattcggaaccgcgatgggtggaactcagtccagccgga
atccttacaacccaaatgaaaatagatcgggatgtagtttgtcgacagaacccaaagtgc
attatttccctggaagtgatgtcaaactccatggagatctgtgtcatcaaggttgaaatt
gaggatttgaatgataacgcacccagattcccaacgagccacattgacattgaaatctcg
gagaacgcctcccctggtacccggtttcccctagagggggcaagcgacccggactcgggg
atctttggagtgcaatcctattccatcaccccgaacgagcttttcggactagaaataaag
accagaggggatgggtcgaaaattgctgagcttgttgtgcaaaaatcgttggacagggag
acccagtcccactattcgtacgagatcagcgcagaggatggaggagaccctcctaaaata
ggcgcggtccagttaaatatcaaggtgatcgattctaatgacaacaaccctgtgtttgac
gagccagtgtacaccgtcaacgtgatggagaactcccccatcaatacattagtcattgac
ttgaacgcaacggatcccgacgagggcactaatggagaggtggtgtactccttcaacagt
tacgtcaccgagaaaacgagagacgcgttcaaaattgaccccggaaccgggatcatcacc
gtcaacgggattttggattatgaaacggcgagaatatacgagatcgacgtccaggccaaa
gatttaggtcccaactctatcccggctcactgcaaagtcacagtgaacgtgatggacacg
aacgacaacccacctgtcatcagcttactctcgctgaacacggagatggtggaagtcagc
gagaacgcgcagcgcgggtatgtcatcgcgctggtgagggtgtcagataaggattcaggg
gcgaacggcaaagtgcagtgcaggctgcagggcaatgtcccgttcagactccaagagtac
gagagcttctccaccatacttgttgatggcaggctggacagagagcaaaaggacacatac
aacctcactatccaggcggaagacagtggcacccctcctttacgcgccacaaagtctctg
gtagtcaaagtcacagatgaaaacgacaaccccccccacttcctcaaaccacactatcaa
gagatggtgatggaaaacaacctccccggttcatgtctgctagcagtgtcagcagaggac
ccggacctggggatgaatggcaccgtttcctactccatagtccccggtgagattaagcac
atggatgtaaacacatatgtcagcataaacccatcaggccgcatttactccatgagatca
ttcgaccacgagtacaccaggacttttgatttcaaagtgctggccagagacaatggtaac
ccctctctgtcaagcaacgccacggtgcgcatcgttgtcctggacgtcaacgacaacaca
cctgttatgaccaaccctccgctcgttaatggcacggcggaggtgtccatccccaggaac
gcaggggtgggttacatggtgacccaggtcaaagcggacgactacgacgagggggagaac
gggcggctgacctacaccatctctgagggggacagggctttctttgagatcgaccaggtg
aacggagaggtgcgctccacccgcatgtttggggagaacgccaaatccaactacgagatc
acggtggtggcgagggaccacggcaagccctccctgtccgcctcggcctacatcgtggtg
tacctgtcaccggacctgaacgcacaggagcccatcggacccgtcaacctgtccctcatc
ttcatcatcgccctgggctccatcgcagccatcctgtttgtcaccatgatatttgtggcg
gtcaagtgcaagagggataacaaggagatccggacgtacaactgcagtttcttctacttg
cgcagggtggcggagtactcatatggcaaccagaagaagtccagcaagaagaagaagctg
agcaagaacgacatccgcctggtgccacgcgacgtcgaggagacagacaagatgaatgtg
gtgagttgctcgtctctcacctcctcgctcaactacttcgactaccaccagcagagcttg
ccgctgggctgcaggcgctccgagagcaccttcctcaacgtggagaaccagaactcacgc
aatgcagctcccaaccacggctatcagcacccattcactgggcaggcccaccagcagcca
gacctcatcatcaacggcatgccactgccagagacggagaattactccattgactccagt
tacgtgaacagcagagcccacctcattaaaagcacgtcgacattcaaagacctggagggg
aacagtctgaaggacagcggccacgaggagagcgaccagaccgacagcgaacacgacgtg
cagagaggacactatgttgacacggctgtcaatgacgtgctgaacatgactgtccccccc
aatgtttgccagctgccagaccaagatcccagcgaaggctttcactgccaggacgagtgc
cgcatccttggccactctgaccgctgttggatgcctcgcgtccccatcccggcgcgtgcc
aagtcgcccgagcacggccgtaatgtcatcgccttgtccatcgaggccaccacggtggat
gtgccccactacgaggatggcaccaccaagaggacttttgccaccttcggcaaggacggg
cccgaggacctggagcggggagagttaaaggggaagcggactcaggagtctcatgtgtgt
agccccaaagccaatggaggggcggtccgcgaagctggcaacgggcgcgaggcggccagc
cccatcacctcccccgtgcacctgaagagcccaatgtccaagacgtcgtctgcctacaac
acgctgaaatgccgcgacgcagagcgaatcgccaaccacagcctgctgcggcagcctgag
gggaaggacagtgagccagctgtcagggagatcaacacgcttctccacgacggccgagac
aaggagtcccccagcagcaagcgcctgaaggacattgtgctttag
DBGET
integrated database retrieval system
