Anoplopoma fimbria (sablefish): 129089916
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Entry
129089916 CDS
T09102
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129089916 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129089916 (polr1a)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129089916 (polr1a)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129089916 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
CDC45
Motif
Other DBs
NCBI-GeneID:
129089916
NCBI-ProteinID:
XP_054453311
LinkDB
All DBs
Position
4:complement(1225233..1255190)
Genome browser
AA seq
1703 aa
AA seq
DB search
MAAKRGCFSNMLFGKDVPWRRLEGMSFGMYSAEEIRKLSVKVITNFRLLDGVGNVAPNSL
YDLALGPADSKEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLFIRGSCLSCHML
TCPRAAIHLLLNQLKLLNHGAMQEVYLIEQVLYQLLEENPKATGDEIEQVLKKFTDSIVG
VNAQGSENTKPIKHLVEKKNSLITDFWKIHMKTRKCPYCGSGRFTVRREHNSKLILTMPS
GGQTTADADDDLMAGKRVYLTASTAREHINNLWVKEGFFLKCLFAGLEEGTISREGEGGF
YPDLFFLELLVVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALIAGEKTVE
EEAPEQTDQTFLIGIPGLTVTDKLYNTWVRLQTHVNIVFDSDMDKMMTEKYPGIRQILEK
KDGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQA
VLNGPNIHPGASMVINEDGRKTILSATSLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKN
GDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELG
RAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDK
PGRVTLLPPAILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLAGRSKIPSKAWIQVPPRAA
PGYKPDSMCDSQVLIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLSCLARL
FTAYLQLYRGFTLGVEDILVKPGANRQRKKIIQESLNIGTKAIQAAFNLPANVDQGEAQS
RWQDAHLNPDQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKG
STVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEF
FFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL
DIPKTPFLQQKQFPFIEDNYEVIKRSQGLDKFLSRLDPQAASQHFESIQRWKAKREGACP
RRGAFLLFSQKKLAKLKQTQERTEADVYGRNVAESQLFQNWRSLDEPSRSKYIRKTSRCP
GPSLGLLKPDICFGSVSENFHNITEKYLQNEGRRSRGSVDTHSLRQLLHYKWQRSLCDPG
EAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPV
LNTRKALKRAKTLRKKLTRVCLAEVLQRVDVVETLRIENHQKLRSFKVTFKFLPLERYCD
DKLLSPQQILHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDHDGEGTADPAGL
DDGEEEMEREVVDDQANEGDADASDAKRKDKQEEEVDYESEEEDRADDAEDKEDQGEDEG
VVEEEEEENTLEVSQTESGRVRAEKRKRPRRDEAEGEEGLDQMRMNTVLESNSAIERYRY
DQQHELWCEVDLVLPVSKVHFDLTSVLSTLAQNAVIVETKGLTRCLLGETTTKSGEKETV
LNSEGINMQEMFNHSDILDINRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRHAIQSNASPLQQMTFETSYKFLKQATMLGSHDELVSPS
ACLVVGKVVKGGTGLFELKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaagcgtggctgcttctccaacatgctgtttgggaaagacgtgccatggcgg
cggctggagggcatgtcgtttggcatgtactctgccgaagagataaggaagctgagtgtg
aaggtgatcactaacttcaggttacttgatggtgttgggaacgtggccccgaacagcctg
tacgatctggcccttgggccagcagacagcaaagaggtgtgttcaacctgctgtcaggac
ttcaacaactgtccaggacacctgggacatgtagagctacctctacctgtatacaacccg
ctgttctttgataaactctacctgtttattcgtggttcctgtctttcgtgtcacatgtta
acatgtcccagagctgccatccacctgctgctgaaccagctgaagttattgaaccatggg
gccatgcaggaggtctacctaatagagcaagttctttaccagctcttggaagagaatccc
aaagccactggagatgagatcgagcaggtgctgaaaaagtttacagactctatagttgga
gtgaacgctcaaggttcagaaaacaccaaaccgatcaaacaccttgttgaaaagaagaac
agtttgatcactgacttctggaagatccatatgaaaactaggaagtgcccttactgcggg
agcggcagatttacagtgcgccgtgaacacaacagtaagctgattctcacaatgccatca
ggaggacagaccactgcagacgctgatgatgatctgatggctggaaagagagtctacctg
acggctagcactgctagagaacacatcaataacctgtgggtgaaagaaggtttcttctta
aagtgtctattcgctggcctggaggaggggacgatttcaagggagggagagggtgggttt
tatccagacctcttcttcctggagcttctggtggtcccaccgtgcaggtatcgtcccatc
aatcgactgggtgaccagatgtttacaaacggtcagacggtcaacatgcaggccgtcatg
aaggactgtggagtcataaggaaactcctggctctcatagcaggggagaaaactgtggag
gaggaggctcctgaacagacggaccagacgtttctgataggtatccccggactgacagta
accgataaactctacaacacctgggtgcgactgcagacccacgtcaacatcgtctttgac
agcgacatggacaaaatgatgacagagaaataccctggaatcagacagatcttggagaaa
aaggacggattgttccggaaacacatgatgggaaaacgagtggactacgcggcacgatct
gtcatctgtccagacatgtacatagggaccaacgagatcggaatacctatggtgtttgcc
accaagctgacctacccgcagcctgtcacgccatggaacgtgaaggagcttcgtcaggcc
gtcctcaacggacccaacatccaccccggtgcctccatggtgataaacgaggacggtagg
aaaaccatcctatcagccaccagccttgcacagagagaagccgttgccaagcagctgctg
acgccctgtcccggtccacataagatgcccatgaaaatagtgaatcgtcatataaaaaac
ggagatgttttgttactcaacagacagccaactctgcacagaccctccatacaagcccat
tgtgcacgcatcctaccaggagagaaggtattaaggctccactatgccaactgcaaggcg
tacaatgctgattttgatggagatgaaatgaacgcgcacttccctcaaagtgagctgggc
agagcagaggcctacacgttagtcagcactgatcaacagtacctcgtccccaaggacggt
aaacctctagcgggtctgatccaggaccacatggtatctggtacgaggatgacgatacga
ggctgtttcttcaccagagtccagtacattgagctggtttacagaggactgactgacaaa
ccaggcagagtcacactgctgccgccggccatactcaaaccacagcaactctggacagga
aagcaggtggtgtctacgctcctgctgaatgttatcccacagaaggctgtgcctctcaac
ctggctggcagatcgaaaatccccagcaaagcatggatccaagtcccaccacgagctgct
ccgggatacaaacctgacagcatgtgtgactcacaggtgttgattcgtcaaggggagctg
ttggtgggggttctggacaaagctcactacgggtcctcagcctacggtctggtccactgc
tgctacgagctgtacggagggcaaaccagtggcaaactgctcagctgtctggctcgactc
ttcactgcttacctgcagctgtacagaggcttcactttgggtgtggaagatatcctggtg
aaaccaggcgccaacaggcagaggaaaaaaatcattcaagaatcactgaatattggcaca
aaggccatccaagcagccttcaacctgcccgccaatgtggatcaaggtgaggcccagagc
cgctggcaggatgctcacctcaacccggaccagagagactttagcatggccgaccacaag
ttcaaagaagtggccaaccaagtgaacaacgacatcaacaaggtgtgcatgcccgtcgga
ctccacacctctttcccagacaacaacctccaactgatggtccaatcaggagccaaggga
tccactgtaaacaccatgcagatttcatgtctactgggccagattgagttggagggccgt
aggcctccactgatgccttctgggaaatctttgccgtgcttccagccatatgaccccgca
cctggcgctggggggttcgtttctggaaggtttctaacgggcatcaaaccacaggagttt
ttcttccactgtatggccggcagagagggactggtggacacagctgtgaaaacatccaga
tcaggatacctgcagagatgtgtcataaagcatctggagggcttggtagtacagtacgat
ctgacggtgagggacagcgatggatccgtggtccagttcctgtacggtgaagacggactg
gatatccccaagactccgttcctgcagcagaagcagttccctttcatagaggacaactac
gaggtcatcaagaggtcccagggcctggacaagtttttgtcacgtctggaccctcaggct
gccagtcaacactttgagtccatccagcgctggaaagcaaagagagagggggcctgtccg
cggagaggagcgttcttactgttttctcaaaaaaagttggccaaactgaagcagactcaa
gaaagaacggaagcagacgtctacggcagaaatgttgctgaatcacagctcttccagaat
tggcgttctctggatgaacccagcagatcaaaatacatcaggaagacctcccgctgccca
gggccctccctgggcttgttgaagcctgacatctgcttcggctctgtatctgaaaacttt
cacaacatcacggagaagtacctccagaacgaaggcaggaggagtcgaggcagcgtggac
acccacagcctccggcagctgttgcactataagtggcagcgttcgctgtgtgatcctggt
gaagccgtgggtctgctagcggctcagtccataggcgagccctccacccagatgaccctc
aacaccttccacttcgccggcagaggagagatgaacgtcactttgggaataccccgactg
agagagatcctgatggtggccagctccaacattaaaactcccatgatgagtgtcccggtg
ctaaacaccaggaaagccttgaagagggcaaagacactccgtaagaagctcaccagagtc
tgtctggctgaggtcctgcagagggtggatgtggtagaaactttgcggatcgaaaatcat
caaaagcttcggtcgttcaaagtcaccttcaaattcctgcctctggaacgttactgtgac
gataagctgctgtcaccccagcagatcctccactacatggaaactaggtttttccgtctc
ctgctggaagccattaagaagcgcagtgccaagctggcgtccattgccgtggaaacaagg
aaggccacgcccagagataaggaccatgatggcgagggaacagctgacccagcagggctg
gatgatggggaggaagaaatggagcgagaggttgttgatgaccaggcgaacgagggagac
gccgatgcctcagacgccaagcgaaaagacaaacaggaagaggaggtggactatgagagt
gaggaagaggacagagctgacgacgccgaggataaagaagatcagggggaggacgagggg
gtggtggaggaggaggaggaggagaacacgctggaggtgtcgcagacggagtctggacga
gtgagagcggaaaagagaaaacgaccaagaagagatgaagcagagggagaggaggggttg
gatcagatgaggatgaacaccgttctggagtccaactcggcgatagagagatatcgctac
gatcaacagcacgagctctggtgtgaggtcgacctggtcttaccggtgagcaaggtgcac
tttgacctgacctcggtcctgtcgacgctggcccagaacgccgtcattgtggagaccaaa
ggcttgacccgctgcctgctgggcgaaactacgacgaagagcggagagaaagagacggtt
ctcaactcagagggcatcaacatgcaagaaatgttcaatcacagtgatatcctagacatc
aacagactgtactctaacgaggtgcatgccatggctaaaacatatgggattgaagtggct
ctgaaggtcatagagaaggagatcaaagatgtctttgctgtctacggtattgaggttgac
cccagacatctgtcacttgtagcagattacatgtgttttgaaggcgtgtataagcccctg
aaccggcacgccatccagtccaacgcctcccctctgcagcagatgacctttgagaccagc
tacaaattcctcaaacaggcgaccatgctagggtcacacgatgagctggtgtcgccctcg
gcctgcctggtggtggggaaggtggtgaaaggtggaacaggactgtttgagctgaagcag
cctctgcagtag
DBGET
integrated database retrieval system
