Anoplopoma fimbria (sablefish): 129089980
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Entry
129089980 CDS
T09102
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
afb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129089980 (syvn1)
04120 Ubiquitin mediated proteolysis
129089980 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129089980 (syvn1)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129089980 (syvn1)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129089980 (syvn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf_RING_Vps8_fungal
zf-RING-like
zf-RING_Vps41
FAR1_N
zf-HC5HC2H
Herpes_capsid
zf-Nse
FANCL_C
Motif
Other DBs
NCBI-GeneID:
129089980
NCBI-ProteinID:
XP_054453405
LinkDB
All DBs
Position
4
Genome browser
AA seq
634 aa
AA seq
DB search
MVRSTLVTATSLALTGAVVAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVGLFTLLLFLKCFHWLA
EDRVDFMERSPNISWIFHFRVLSLMGLLAILDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYLLHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNNNQTPAPAQAPPPAPAAPANAP
AVPPANVAPGMLPGFPPGVFPFWGPFPAVPPPAAAAAAPGADAPQSSTEATQAAGSSQST
SSTADAAAGAAAPGSAIPGFPFSFPPPPFPTAPWLMPPPPPFVSSMPPPPPSLSRLSEEE
LREMEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLTTVTTLAPPRAEASAGAAGGTND
AAASPPEAGSSTDIPSQEKDSSSSEQVDGAVVSSQQADSTSTASDTERKEELDEGAAGAE
GEEDGEPNAAELRRRRLRKLETSSSPSSSPPPDN
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgatcaaccttggtgaccgccaccagtctggctctgactggagctgtggtggca
cacgcctacctcctcaaacaccagttctacccgactgtggtctacctcaccaagagcagc
cccagcatggcggtgttgtacattcaggcctttgtgttggtgttcctgctgggaaagttc
atgaggaaggtcttttttggacagctaagggctgcagaaatggagcatctcatcgagcgt
tcctggtacgctgtgaccgagacgtgcctggcattcactgtgttcagggacgacttctcc
cctcgctttgtcggcctcttcacactcctgctcttcctcaagtgcttccactggctggcc
gaggaccgggtggactttatggaacggagtccaaacatatcttggatctttcacttcaga
gtattatctctcatgggactgctggctatcctagacttcctgtttgtcaaccatgcctgt
cacagcatcatcaccagaggagcctcagtccagcttgttttcggatttgagtacgccatc
ctgatgaccatggtgctgacgaccttcattaagtaccttctgcacaccgtcgacctgcag
agcgagaacccctgggacaacaaggccgtctacatgctctacaccgagctcttcacaggt
ttcatcaaagtgctcctgtacattgccttcatgaccatcatgataaaggtgcacaccttc
cccctgtttgccatccggcccatgtatctggctatgaggcagttcaagaaagctgtaaca
gatgctatcatgtctcggagagccatccgcaacatgaatacactataccccgacgctact
cctgaagatctgcaggcctctgacaacgtctgtatcatctgtagagaggaaatggtcacc
ggcgccaagaaactgccttgtaatcacattttccactccagctgcctacgctcctggttc
cagaggcagcagacctgcccgacctgtcgcatggacgtccttcgtgcatccaacaacaat
cagactcctgcaccagcacaggccccgccccctgctccagctgcccccgccaacgccccc
gcagtcccgcccgccaacgtggcccctggcatgttacccggctttccccccggcgtcttc
cccttctggggtcccttccccgcagtgcctccccctgctgcagcggctgcagctccgggt
gccgatgctccacagagcagcacggaggctacacaggcagccggctccagccagtccacc
tcgtccaccgcagacgccgctgcaggtgctgcagctccgggatcagcaatcccaggcttc
cccttctccttccctcctcctcccttccccactgcaccatggctcatgcctccccctcct
cccttcgtgtcgtccatgcctcctcctcctccttctctgtcccggctgtccgaggaggag
ctgagggagatggaggcggagggtcggcggggcctcgaggccaggctccagtgtctccag
aacatccacaccctgctggacgccgccatgctcaacatccaccactacctcaccaccgtc
accacactcgctcctccccgggccgaggccagcgccggagcagccggtgggacaaacgac
gccgccgcttcgcctccggaagctggcagcagcacggacatacccagccaggagaaggac
tcctccagctccgagcaggtggacggagctgtagtctcctctcagcaggctgactctact
tccaccgcctcggacacggagagaaaagaagagctggacgaaggagcggcgggcgcggag
ggggaggaggacggagagcccaacgccgccgagctgaggcgccgccgccttcgtaagctg
gagacctcatcgtcgccatcgtcctccccgcctcctgacaactga
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