Anoplopoma fimbria (sablefish): 129090038
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Entry
129090038 CDS
T09102
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129090038 (pcdh18b)
Cell adhesion molecules [BR:
afb04515
]
Cadherins
Protocadherins
129090038 (pcdh18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
129090038
NCBI-ProteinID:
XP_054453484
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Position
4:1650483..1660601
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AA seq
1235 aa
AA seq
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MRTTMTPTRGAVFSSLLTLLLLAAMTRGATGKTLKYKVYEEQKVGTVIARLKEDVAGVLS
KLPSTLSFRFRAMQRGSAPLLSVREEDGEISIGTKIDREKLCEKNLNCSIEFDVVTLPTE
FLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRIPLDGAVDADVGENSLHTYSI
TPNNFFKIEVRTRTDGAKYAELLVMRELDREVLSSYQLQLTASDNGVPPKSGSTLVKISI
SDSNDNSPAFDEQAYVINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVPTKILET
FKINPENGHITLIKKVDYESTASYELDVQAQDLGPNSIPGLCKIVVKVVDVNDNKPEINI
NLMTSGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVLCRLHGHGHFRLQKTHEKNYM
ILTNVSLDREKRSEYSLTVIAEDKGSPSLSTIKHFTVQVLDENDNPPYFEKSRYEVFKSE
NNSPGAYLMTVVASDPDLGTNGQVTYTIMDALVQGSPISTYVTIDPSNGAIYALRSFDHE
DVSRIAFTIQARDGGNPVLSTNTTVLLTVLDENDNPPIIHSPSLRNHTAELPVWKYASPG
QLVSALKVTDRDTGTNGEVSCAIVGGNEDGLFVMDPRRCELRTNGSLEQAPRDVMEIRVE
VQDRGTTRLSTGAVFRLSLQENMDILPALYPTGSSQAPLDLSLIVIISLGAVCALLLIVM
VMFATARCSREKKDPRHNYNCRVAENSYQNHPKKPARQIHKADITLVPTVNGTLPVRAHA
RSPSASPTPERGTLGSRQSHHSRQSLNSLVTISSNHVQENFALELAHATPPVEQVSQLLS
MLHQGQYQPRPNFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDRL
LGEGFTEIYAPDGQHRSHAAMRLCTEECRVLGHSDQCWMPPLASPSSSSDYRSNLYIPGE
EARQATDLSQEKTPQPCTDTGPARNQSFSTFGKDLSGEDGGEEEEGGCGGGEARDEDLCG
TTSLLSEMSSVFQRLLPQGLDSYVQVNENQKGTSLSGVGVPMTGSLDRRRGHLPGKPNPS
VHQQGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPSTKLSSQSSGHKGSQAPKSSPQ
NSGHTAKPHSSPLLTALVSPTLVQPSPAPVPVALPGPSSKWLPAMEEIPENYEEDDFDSV
LGHLQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgaggacaacaatgaccccaaccagaggagctgtgttctcctctctgctcacactcctg
ctcctggctgcgatgacgcgcggtgccaccggcaagactttgaaatacaaagtttacgag
gagcagaaagtgggcacagtgattgcccggctgaaagaagacgtggccggggtgttatcc
aagctaccgagcaccctgagcttcaggttccgggccatgcagcggggcagtgcgccgctc
ctgtccgtccgggaggaggacggggagatcagcatcggcaccaagatcgaccgtgagaag
ctgtgtgagaagaacctgaactgctccatcgagttcgacgtggtcacgctgcccacggag
ttcctgcagctcttccacgtggaggtggaggtcctggacatcaacgacaactccccgcac
ttctccagagccatcgtgcccattgagatctcggagagcgcctccgtggggacgcgcatc
cctctggacggggccgtggacgcggacgtcggggagaactccctgcacacttactccatc
accccaaacaacttcttcaagatcgaagtgaggaccaggacggacggggccaagtacgcg
gagctgctggtgatgagagagctggaccgggaggtgctgtccagctaccagctgcagctc
acggcctcggataatggagttcccccaaagtctggctctactttggtcaagatcagcatc
tcggattccaacgacaacagcccagcctttgacgagcaggcttatgttatcaatctgctg
gaaaactctcccctcgggactctgattattgatttgaacgccacggatccagacgagggc
acgaatgggaaaatagtctactccttcagcagtcatgtcccgacaaagattttggaaaca
tttaagataaacccagaaaatggccacattactcttattaaaaaagtggactatgaaagt
actgcatcctatgagctggatgttcaggctcaggacttgggcccaaattccattcctgga
ctgtgcaaaattgtggtgaaagtagtggatgtaaatgataacaaaccagagataaacatc
aacctgatgacttcgggcaaggaggaagtggcctacatctctgagggtgccccagtggac
accttcatagctctggtacgtgtcgacgacagtgacgctgggctcaatggcgaggtgttg
tgcaggctgcacggacacggacacttcagactccagaagacccacgagaagaactacatg
atcctcaccaatgtctcgctggacagggagaagaggtcagagtacagtctgacagtcata
gctgaagacaagggctcccccagcctctccaccatcaaacacttcaccgttcaggtgctg
gatgaaaacgacaatcctccgtattttgaaaagagccgctacgaggtctttaaatcggag
aacaactctcctggagcctacctgatgaccgtggtggcctcggatccagatctgggaacc
aacggccaggtcacctacaccatcatggatgctctggttcaggggagccccatctccacc
tacgtcaccattgacccttctaatggtgccatatatgccctacgcagctttgaccacgaa
gacgtcagccggatcgccttcaccattcaggcacgtgacgggggaaaccctgtgctgtca
accaacaccactgtccttctgactgtcctggatgaaaatgacaaccctcccatcatccac
tccccctccctacggaatcacaccgctgagctgccagtgtggaagtatgcatcacctggt
cagctggtctcagcgctgaaagtcacagaccgcgacaccggcaccaatggcgaggtgagc
tgtgccatcgttggtggcaacgaggatgggctgttcgtgatggacccccggcgatgtgaa
ctcagaactaacggcagcctggagcaggctccacgggacgtgatggagatcagggtggaa
gtgcaggacagggggaccactcggttgtccacaggggccgtctttagactctccctgcag
gagaatatggacatcctccccgctctctatcccactggctccagccaggccccactggat
ctctccctcatcgtcatcatctctctgggcgccgtttgcgctctgctgctcatcgtcatg
gttatgtttgccaccgcccgctgcagccgtgaaaagaaagaccccaggcacaactacaac
tgccgtgtggctgagaacagctaccagaaccaccccaagaagcccgctaggcagatccac
aaggcagatatcacactggtcccaaccgtcaatgggactctgcctgtgcgggcccacgcg
cgctccccctcagcctcccctacaccggagaggggcaccctgggaagcaggcagagccat
cacagccgccagtccctcaacagcctggtcaccatctcctccaatcatgtgcaggagaac
ttcgcccttgagctggcccatgccacccccccagtagagcaagtctcacagcttctgtcc
atgctccaccagggccagtaccagccacggccaaacttcagaggcaacaaatacaccagg
agctacagatatgccctgaatgagatggacaagttcagtctgaaggacagcggtcgtgga
gacagtgaagcaggggacagcgactacgagcctggaagggagtcacccatggacaggctc
cttggtgagggctttactgagatatatgcccctgatggccagcacagatcgcatgcagct
atgaggctctgcacagaggagtgtcgtgtcctaggtcactcagatcagtgctggatgccc
cccctggcctccccgtcttcgtcctctgactaccgcagcaacctctacatccctggcgaa
gaagcccgccaagcaactgacctctcccaggaaaagaccccgcagccctgcactgacacc
ggccccgcccgaaaccaaagtttctccaccttcggcaaggacctgagtggtgaagatggt
ggagaagaggaagagggagggtgcggtgggggcgaggccagagatgaggacttgtgtggg
accacgtcgctgctgtcagagatgagcagtgtgttccagcggttgctaccccagggtctg
gactcgtacgtccaggtcaacgagaaccagaaggggactagtctcagtggggtgggcgta
cccatgactggatctttagatcgcagaagaggccatctccctggcaagcctaacccctcc
gtccaccagcagggcgtggcagcctgggccgccaacacccacttccagaacccgggcagc
agcattggcccatctggccaccaccagggcggcagctaccacaccctgaaaccaagcacc
aagctcagctcccagagcagcggccacaagggctcgcaggcgcccaagagcagcccccag
aacagcggccacaccgccaaaccccacagcagcccgcttctcacggcgctggtcagcccc
actctcgtgcagccttccccggccccggtgccggtggcgctccccgggccttcctccaag
tggctgccggccatggaggagatcccagagaactacgaggaggacgattttgactccgtg
ctcggccaccttcagggcaaacgcagcgacagccgacatgagctggtggacgccagcgag
ctggtggctgagatcaacaaactcttacaggatgtccggcagagctag
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