Anoplopoma fimbria (sablefish): 129090070
Help
Entry
129090070 CDS
T09102
Symbol
upf3b
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129090070 (upf3b)
03015 mRNA surveillance pathway
129090070 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129090070 (upf3b)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129090070 (upf3b)
mRNA cycle factors
P-body specific factors
129090070 (upf3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
129090070
NCBI-ProteinID:
XP_054453544
LinkDB
All DBs
Position
4
Genome browser
AA seq
475 aa
AA seq
DB search
MKEDKENARPKERKVEIRCEDAEKTERSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYLEFFSNDASLYPHLYARAYINFKNQEDIVLFRDRFDGYVFIDSRGQEYPAIVEFAP
FQKTAKKRSKKKDAKCGTIAEDPDYKKFLEFYNGDDDKLASTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEVDKMKRHEK
PLEKDKDQVKEEPKIKLLKKPDRSDDADSEKPKEKAKKPDRPNKEDRSMGVVDHKRRPHI
ENKEDRGRKADEEGRKEFRERDPDRDRERDRERDRTREERLQREKERIRRQDENRRRRRE
RQDGENSCRKREEEVKKDKERARERKKGENIGDSSHSERPERPTKDYKKEESNKRDRLRN
KDRPAIQLYQPGARSRNRGGGGGGGGGGGGGGAEANSSDRMLETETEKVADKGDD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacgctcggcccaaagagagaaaagtggaaataaggtgtgaa
gatgcagaaaagacggagaggtcgaaggaaaagaaagaggccatgacaaagattgtgatc
agacggctgccaccaagtctgaccaaggaggagctggaggagcagctacaacctctccca
gaggtggactacctggagtttttctccaatgacgccagcctgtatcctcacctctacgcg
agggcgtacatcaattttaaaaatcaagaggatatagttctcttcagagatcgatttgat
ggatatgtgttcatcgacagcagaggacaggagtatccagccatcgtggagtttgcacct
tttcaaaagactgccaagaaaagaagtaagaagaaggatgcaaaatgtggaacaattgct
gaagatcctgattacaagaagtttcttgaattttacaacggagatgacgacaagttggca
tcaaccccagagacactgttggaagagattgaggcaaaatcaaaggaacttgtagcaaaa
aaaacaactcctctgctggacttcttgaagaataaacagagaatcagagaggaaaagaaa
gaagagagaagaaggagggagcttgaacgcaagcgcctgcgtgacgaggagcgtcgtaag
tggagggaggaggacagaaggaagcgcaaagaggtagacaagatgaagagacacgagaaa
cccctggagaaagacaaggaccaagttaaagaagaaccaaagattaagctcctgaagaag
ccagacagaagtgatgatgctgattctgagaagcccaaggaaaaagccaagaaaccagac
aggccaaataaagaggacagatccatgggggtcgtcgatcataagaggcgtccacacatt
gaaaataaggaggatcgagggaggaaagcggacgaagaggggaggaaggagttcagggag
cgtgacccagatcgcgaccgagagcgcgacagggagcgcgacagaacgagagaggagcgg
ctgcagagagagaaggagcgcatcaggcgacaggacgaaaatcgtcggagaaggagagaa
cgtcaggatggagagaactcatgcaggaaaagggaggaggaggttaaaaaagacaaagag
cgtgccagggagaggaaaaagggtgaaaacattggagactcttctcactctgagaggcca
gagaggcctaccaaagactacaagaaggaggaaagtaataaaagagaccgtctacgaaat
aaggaccggcctgcgattcagctgtaccagccaggggccagaagccgcaatcgaggtggc
ggaggaggaggaggaggcggaggaggcggaggaggagcggaagccaactcttccgacaga
atgctagaaactgagaccgagaaagtggctgacaaaggagacgactga
DBGET
integrated database retrieval system
